Sequence of DPV Rice grassy stunt virus
Rice grassy stunt virus segment RNA2 p2v and p2c genes, genomic RNA, isolate Longan
ACC No: FR696597
Dated: 2010-12-05 | Length: 4054 | CRC: -1987939612
ID FR696597; SV 1; linear; genomic RNA; STD; VRL; 4054 BP.
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AC FR696597;
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DT 05-DEC-2010 (Rel. 107, Created)
DT 05-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Rice grassy stunt virus segment RNA2 p2v and p2c genes, genomic RNA,
DE isolate Longan
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KW .
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OS Rice grassy stunt virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-4054
RA Hoang H.T.T.;
RT ;
RL Submitted (05-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL Hoang H.T.T., Plant Cell of Biotechnology, Institute of Biotechnology, 18
RL Hoang Quoc Viet, Cau Giay, Hanoi, 10000, VIET NAM.
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RN [2]
RA Hoang H.T.T., Lam N.D., Nguyen C.N., Chu H.H.;
RT "Genetic variation of Rice grassy stunt virus strains isolated in Vietnam";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .4054
FT /organism="Rice grassy stunt virus"
FT /segment="RNA2"
FT /lab_host="Escherichia coli DH5-alpha"
FT /isolate="Longan"
FT /mol_type="genomic RNA"
FT /country="Viet Nam:Long An Province, Cuulong River Delta"
FT /isolation_source="rice leaf tissue lysate"
FT /db_xref="taxon:66266"
FT CDS 210. .812
FT /gene="p2v"
FT /product="hypothetical protein"
FT /protein_id="CBX26656.1"
FT /translation="MSISIPASEYQSSKTYSQLLMTFRDMVSEEQYKVIKERMVENNKH
FT YYALDKFSQGVYDIKDMQILVADLSWLCAFDKSSDQRTRETLIMISKCVLDIMLSLKPE
FT VSQTKCFVCDKKSTYETDNLSIARLDDVSNRFSGGSVHYMVKLKDHDKVGLMSYIHELK
FT KIGGYRGWYRDGGKLRHEYIVYTDAKPIMREKFAPVC"
FT CDS complement(1379. .3847)
FT /gene="p2c"
FT /product="hypothetical protein"
FT /protein_id="CBX26657.1"
FT /translation="MGLLVITFALALLELSETKSLYTQVIYHDEGDRITSSFSCNYYDC
FT NEGISICSRARYTSGYYLEKTGLNTAGLCRTDTTKCCGKMDKFSDNVILRSTSIRRVDD
FT IFINECNRWILRRHVKMTIKTTPIDTKDMDSRSLRKGTYDQFILSAESLEVCVHKNGEY
FT DSKIIVKCTDGILTSSEKNCKLWIDHTEFEFTDCTSRQLPLYTDVVNVAFNDVYRSVKC
FT EATNICSMYDRMDFWLRLKHWDCNKGFVWFLYSGIALIIITIIFTIIGLIKYYLIIVPT
FT NFVFRIMKKLIPNPFKLLKRRRSDYNAHELVRVKQDELSNLADENIKDVDSDKGKTLPT
FT RYRMRDGTYLTVGIILVFLPLVLGSCRDGVDSITSLSTCNSYACRSVTTINLKFRSMGD
FT ETCLSFKDANLKIRVLGISMRCNSRVIYYTRKYRYVITRDDYKCFTGPDCSLNPPKSIW
FT DDEEQYLHHDYCKYENVGVFSCGVPFIRSSHWQRMKVESGDKLICSAEECQEFQPYIVL
FT VITMGTNQTIAEISSSVYKGNGYTMTLDSTTPVLLPTKFVRCGSELFKVNFNDLGDLSD
FT DHYGSLQCPDHDSAYELSKKCEIKYQHIYEHTSNIMVDSGDSKLTGTNTTNNDLEHLEP
FT LFGGYQISTDQMWPITIQIKTLKELVQEHESDFVGSISKCSIKGVSRLIGGAIINLYIE
FT SERIGWGLLTCEDLSSFRFNVEGLGFQKFSKHISVYTHTSSDVRVNCNMTTGRGVRRVV
FT CETSLREHTIEVSSDKNNIENGMVQFRSDQPLVKFLIEFVEDNPKTSIVSASVVIMYVS
FT RILIGKVNNK"
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SQ Sequence 4054 BP; 1340 A; 726 C; 672 G; 1316 T; 0 other;
fr696597 Length: 4054 05-DEC-2010 Type: N Check: 4332 ..
1 acacaaagtc ctgggcaaaa gaaaagcaaa ataaccaact atagattagc
51 caaaaccttt ttgttgaaat agttagtaat ttataagttt taatttatta
101 gtttaaattt ataagtttta attcataatt tgtattttaa atattacaat
151 ttagaacata ttaattaatc ttaagtatat tgtatttgat ttagtagagt
201 gtagcaaaga tgtctatttc aataccagca agtgaatatc aaagtagcaa
251 gacttatagt caactactta tgacttttag agacatggtc tctgaagagc
301 aatataaagt gatcaaagaa agaatggttg aaaataataa gcattactat
351 gctctagata aattctcgca gggtgtttat gatataaaag acatgcagat
401 attagttgca gacttgtcat ggctttgtgc ttttgacaaa tcttcagatc
451 aaagaactag agaaacattg ataatgatta gcaagtgtgt tttagatatt
501 atgctgagcc tgaaacctga agtcagtcag acaaaatgct ttgtttgtga
551 caagaaatca acatatgaga ctgataattt atcaattgct aggctagatg
601 atgttagtaa taggttctct ggtggatctg tgcactacat ggtgaagctc
651 aaagatcatg ataaggttgg actcatgtca tatatacatg aactaaagaa
701 gattggaggg taccgtggtt ggtacagaga tggtggtaaa ctaagacatg
751 aatatattgt ctacactgat gcaaaaccca taatgaggga gaagtttgca
801 ccagtctgct gagatgtaag agagggtgaa ggaatactag taactgataa
851 aaaaacctaa aaaacataaa aaagacaaaa aaaacaaaaa aacaaagaaa
901 cacaaaaaac acacagaaga acaaaaaaga aaaaacaaca caaaagccat
951 aagtgagacc aatgtgaaaa ttatggagaa atatgagatg aataaaggga
1001 agaaaggtag ataaagatat aaggagtgaa aatatgccat ttaaagaagt
1051 agtaatatga ggggaaaaaa cacatcaata ataaaaatgt ttaaagtgaa
1101 atagcaaaat gtccttcggg acatatccga ggtgttgtgc accggattca
1151 caccgaagtg tgactttctt ttatctttaa tgtttaaatt tgattctttc
1201 cttagttctt tgtatgtctc aacatggtgt aactctcgca ttctatatga
1251 tattttccct cttcttaata tttgtgttct tccagtcaca tagtttttta
1301 tgatttcaat ctctcctttc tgatcattga gttgtggttt ataatgactg
1351 ctggcatctt gtggatagat ttacttattt atttattatt tactttccca
1401 atgagaattc tagagacata cataattaca acgcttgcag aaactatgct
1451 ggtctttggg ttgtcttcca caaactcaat taagaatttg acaagtggtt
1501 gatctgatct aaattgcacc attccattct ctatattgtt cttatcagag
1551 gaaacttcaa ttgtgtgttc cctaaggctt gtttcacaaa ccactcttct
1601 cactcctctt cctgttgtca tgttgcaatt gactctaaca tcactacttg
1651 tgtgggtgta gactgatata tgtttcgaga acttctgaaa ccctaagcct
1701 tcaacattaa acctgaatga tgataggtcc tcacaagtga gtaatcccca
1751 accaattctc tcactctcaa tataaagatt gattatggct cctccaatca
1801 acctggaaac acccttaata ctacacttcg atattgaacc aacaaaatca
1851 ctttcatgtt cttgtaccaa ttcctttagt gttttgatct gtatggtaat
1901 tggccacatt tgatcagttg agatttgata accaccaaac aaaggctcta
1951 gatgttccag atcattgtta gttgtattag ttcctgtaag tttgctatct
2001 ccactatcta ccataatatt agaagtgtgt tcataaatat gttggtattt
2051 gatttcacac ttcttagata attcataggc tgaatcgtgg tcaggacact
2101 gaagtgaacc gtaatgatca tcactcaagt cacccaagtc gttaaaattg
2151 actttaaaca gttcactacc acaccttaca aattttgtag gtaataaaac
2201 tggagttgtt gagtctaaag tcattgtgta tccattgcct ttataaactg
2251 aggaactaat ctcagctatg gtttgatttg tacccatagt gatcaccaag
2301 acaatgtatg gttggaattc ttgacattct tctgctgaac atattaactt
2351 atctccactc tcaactttca ttctctgcca atggctagat cttatgaaag
2401 gaactccaca ggaaaagacc cccacattct catacttaca ataatcatga
2451 tgtagatatt gttcctcatc atcccagatg ctctttggag gatttaagct
2501 acaatctgga ccagtgaagc acttataatc atcccttgta atgacgtacc
2551 tatactttct ggtgtagtaa atcactcttg agttacatct catgctaatc
2601 cctagaacac gtattttgag attagcatct ttaaaagata aacaagtctc
2651 atcacccatt gatctaaatt tcaaatttat agttgtgact gatctgcatg
2701 cataggaatt gcaagtacta agagaggtta tgctatcaac tccatctctg
2751 caagaaccta gaacaagggg aagaaatacc aaaataattc cgactgttaa
2801 atatgtacca tctctcatac gatacctggt tggtaaagtt ttacccttat
2851 cggaatcaac atccttaatg ttctcatctg ctagattgct taattcatcc
2901 tgtttcactc ttactagctc atgagcattg taatcagatc tcctcctttt
2951 cagtaatttg aaggggtttg gtattaattt cttcataatc ctaaagacaa
3001 aatttgttgg tactattatc aagtaatact taataagccc tattatggtg
3051 aaaattattg tgattatgat tagtgcaatt cctgagtaaa gaaaccagac
3101 aaatccttta ttgcaatccc aatgttttag tctcagccaa aaatccatcc
3151 tatcatacat tgaacaaatg tttgtcgctt cacacttcac actacgataa
3201 acatcattga aagctacatt tacaacatct gtgtatagtg gtagctgtct
3251 tgaagtacaa tcagtaaatt caaattcagt gtggtctatc catagtttgc
3301 agtttttctc agaacttgtt agtataccat cagtgcactt cactattatc
3351 ttagaatcat attctccatt tttgtgaaca catacctcta aggattcagc
3401 agaaagtata aactgatcat aagtcccttt tctcaaagat cttgagtcca
3451 tatccttcgt gtcaattggt gttgtcttaa tcgtcatttt cacatgcctt
3501 ctcagtatcc acctgttaca ctcattgatg aagatatcat caactctgcg
3551 tatagatgtt gatctcagta ttacattgtc actaaactta tccatcttac
3601 cacagcactt ggtggtatct gttctacaca aaccagctgt gtttagtcct
3651 gttttctcca aatagtatcc agaagtatat ctggctctgg agcaaataga
3701 aattccttca ttacagtcat aataattgca gctaaatgat gaagtgatcc
3751 tatcaccttc atcatggtag ataacttgtg tgtacaaaga cttggtttcg
3801 gatagctcta gcaaagctag agcaaatgtg atcacaagca accccattcc
3851 tatacaggaa caaatggtct ataataacca attaatgggt ggtgaatgtc
3901 actaatagac cactggttgc cagttgtgaa aacgattctg attgaagttg
3951 aattaaaaat cctcatagat gaaacaaata agcaagtata aaacaaaggt
4001 cttccttgac tttaagaaat gtgtttgttt tacaaatatg cccagacttt
4051 gtgt