Sequence of DPV Rice grassy stunt virus
Rice grassy stunt virus segment RNA6 p6v and p6c genes, genomic RNA, isolate Longan
ACC No: FR696601
Dated: 2010-12-05 | Length: 2516 | CRC: -1464114617
ID FR696601; SV 1; linear; genomic RNA; STD; VRL; 2516 BP.
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AC FR696601;
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DT 05-DEC-2010 (Rel. 107, Created)
DT 05-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Rice grassy stunt virus segment RNA6 p6v and p6c genes, genomic RNA,
DE isolate Longan
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KW .
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OS Rice grassy stunt virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-2516
RA Hoang H.T.T.;
RT ;
RL Submitted (05-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL Hoang H.T.T., Plant Cell of Biotechnology, Institute of Biotechnology, 18
RL Hoang Quoc Viet, Cau Giay, Hanoi, 10000, VIET NAM.
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RN [2]
RA Hoang H.T.T., Hoang N.T., Nguyen N.T., Nguyen C.N., Le B.T., Chu H.H.;
RT "Genetic variation of Rice grassy stunt virus strains isolated in Vietnam";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2516
FT /organism="Rice grassy stunt virus"
FT /segment="RNA6"
FT /lab_host="Escherichia coli DH5-alpha"
FT /isolate="Longan"
FT /mol_type="genomic RNA"
FT /country="Viet Nam:Long An Province, Cuulong River Delta"
FT /isolation_source="rice leaf tissue lysate"
FT /db_xref="taxon:66266"
FT CDS 75. .614
FT /gene="p6v"
FT /product="hypothetical protein"
FT /protein_id="CBX26664.1"
FT /translation="MSKSHSDVVGTVSGLNYRLFYDMIPDRISQKLRLREITDPKTCNA
FT SKIPLVLKAAEEVSRMDIDHDKDGYTKVQVKMPEYMKAYLEEMLSASNSTTTGISYSVF
FT LVYMQDKCGDWITEHYLKNVHSMSKQQLHELITGIIETFSSDDIEDEHYDDLICKIPAY
FT VYNIVLRYIDMSGLTT"
FT CDS complement(1460. .2437)
FT /gene="p6c"
FT /product="hypothetical protein"
FT /protein_id="CBX26665.1"
FT /translation="MALLQKLGSSKVSSKRMSPAMIPLDSINQDLVDPQQEKDAKNKKE
FT GKKKDLDVSMDPLTGKLPLGKKKQVDTGGIAYLENALMQLDLHDFSFDSIRPRTKTFHM
FT KRQHFKISTVNSRFRLDVEKTGLFSKTLKYSRICTLCLAFLGIKNRAQGTISFTFRDLS
FT YLSENDQIDFKVKNRISKSFAAIASFPAPIFNDDLGNLICDFEIENASVNGVVIGDLLV
FT LLGIEQSDLPVCYEPQKAKIFEYKPLTEKGLNKISNFAGYVDNVLKAAINHREGEDDGF
FT STEGLGVLVHPRVKQIDNSIPIKSLENKPQKMLMRDGSYLDVNP"
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SQ Sequence 2516 BP; 823 A; 445 C; 442 G; 806 T; 0 other;
fr696601 Length: 2516 05-DEC-2010 Type: N Check: 2360 ..
1 acacaaagtc ctgggcaatt acaaacaaga aaaacttaat taaatactaa
51 ggtttacttt ttcttcaaat aggtatgtct aaatctcatt ctgacgttgt
101 gggcactgtg tctggtctta attatagact attttatgat atgattcctg
151 ataggatatc tcagaaactc agattaagag agataactga tccaaagaca
201 tgcaatgcaa gcaagatacc cttagtgctc aaagctgctg aggaagtgtc
251 taggatggat atagaccatg ataaggatgg ctacacaaag gtccaggtta
301 aaatgcctga gtacatgaaa gcttacctgg aagagatgct tagtgcaagc
351 aactcaacta ccactggtat ctcctatagt gtgttcctag tgtacatgca
401 ggacaaatgt ggtgactgga taacagaaca ttacctaaag aatgttcact
451 ctatgtcaaa gcaacaattg catgaactga tcactggaat aattgaaacc
501 ttcagttcag atgacataga ggatgagcac tatgatgatt taatatgcaa
551 gatccctgct tatgtgtaca atattgtcct tagatacata gatatgagtg
601 gcttaacaac atgaaactca ttactcacca ttgcaagagg ctatagagag
651 gtatataatg ttgtcaataa caaacattat ataataagat aatgaattga
701 aaaaacaaaa atgaaacaaa acaaagtcta gcttgtatag ctcataaaat
751 attaacttat aattaataat caatgagaca acaataatta gaactaataa
801 aaacaatact agtaaaacta acatatagaa aatgaaggaa agaaaataat
851 taaaaaccgg aaaagagaaa agtgttgggg aaagaggagg taagaatggt
901 gagaaataag gaaaggaaaa gaagatgaaa gggagtatgc acaagtaatg
951 aataaatgta taataagttc cagataatgc catatgaata attcgagaag
1001 atatcatgaa aacaaactag tgaactaaga acaaaaaaac agaaaagaaa
1051 gaaaactaaa aaaatactac tagcttcggc tagtatccca ttccatttca
1101 tcatatcttg gttcattccc tactaggtgc ataacgatca attgggcttc
1151 tacattgtca gagggtttcc taatttctta ttctggagat ctacttattt
1201 aaattaaaat taaattatgt tggatgctgg ccgaagccag tgtgtgttat
1251 agcatgacaa gggaaacaag caacatttat cttgacaact actaactata
1301 tttagttatt tgaattaaca caacattcac tcaataccaa ttatttccat
1351 ttttttgtat ttgttctttt catatttttc tctttttttg tttttttgtc
1401 tgtttttttg tcctgattcc tgctctcctc ttcccttagt ttatttgttc
1451 ttgttccact taggggttaa catctagata tgagccatct ctcatcaaca
1501 tcttctgagg tttgttctcc agacttttta taggaatgga attatcaatt
1551 tgtttcaccc tagggtgaac aaggactcct aaaccctctg tactgaaccc
1601 gtcatcttca ccttcccgat ggtttatagc agccttgagg acattatcta
1651 catacccagc aaagttcgat atcttattta accctttctc agtgagtggt
1701 ttatactcaa agatttttgc tttctgtggt tcatagcaga ctggcaggtc
1751 agattgctct atgcctagaa gaaccaatag atctcctatc accactccat
1801 taacagatgc attctcaatc tcaaagtcac agattagatt tcctaaatca
1851 tcattgaaaa ttggtgctgg aaatgatgct attgcagcaa aactcttgct
1901 gattctgttt ttgaccttaa agtctatttg atcattctcg gacaggtaag
1951 acaagtctct aaaagtaaaa gaaattgttc cctgagctct atttttgatc
2001 cctagaaaag ccagacacaa tgtgcagatt ctactatatt tgagagtctt
2051 ggaaaagaga cctgtcttct ccacgtcaag tctgaatctg ctattaacag
2101 tgcttatttt gaaatgctgt cttttcatgt ggaaggtttt tgttcttggc
2151 ctaatgctat caaagctgaa gtcatgtagg tccagttgca ttaaagcatt
2201 ttctaggtaa gcgattcctc cagtgtctac ctgtttcttt ttacctaggg
2251 gtagcttacc ggttaaagga tccatggaaa catctagatc cttcttctta
2301 ccttccttct tattctttgc atctttttcc tgttgtgggt ccacaaggtc
2351 ttgatttatt gaatcaagag gtatcatagc gggtgacatt ctcttggaac
2401 tcaccttact tgaacctagc ttttggagta aagccatttt tttacagaat
2451 gtgaaaaaag atttccttta tcaatatgta agtttttcgc ttttcaaaga
2501 tgcccagact ttgtgt