Sequence of DPV Cotton leaf curl Gezira virus
Cotton leaf curl Gezira virus DNA-A, complete sequence, clone NT31
ACC No: FR751145
Dated: 2011-06-22 | Length: 2764 | CRC: 1247719698
ID FR751145; SV 1; circular; genomic DNA; STD; VRL; 2764 BP.
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AC FR751145;
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DT 22-JUN-2011 (Rel. 109, Created)
DT 22-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE Cotton leaf curl Gezira virus DNA-A, complete sequence, clone NT31
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KW complete genome.
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OS Cotton leaf curl Gezira virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2764
RA Tahir M.N.;
RT ;
RL Submitted (25-DEC-2010) to the INSDC.
RL Tahir M.N., Agricultural Biotechnology Division, National Institute for
RL Biotechnology & Genetic Engineering, NIBGE, Jhang Road, Faisalabad, Punjab,
RL 38000, PAKISTAN.
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RN [2]
RX DOI; 10.1371/journal.pone.0020366.
RX PUBMED; 21637815.
RA Tahir M.N., Amin I., Briddon R.W., Mansoor S.;
RT "The merging of two dynasties-identification of an african cotton leaf curl
RT disease-associated begomovirus with cotton in pakistan";
RL PLoS One 6(5):e20366-e20366(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .2764
FT /organism="Cotton leaf curl Gezira virus"
FT /segment="DNA-A"
FT /host="Gossypium hirsutum"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Sindh, Hala"
FT /collection_date="2005"
FT /clone="NT31"
FT /tissue_type="Leaf"
FT /db_xref="taxon:222459"
FT CDS 162. .530
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="CBY85327.1"
FT /translation="MWDPLLNDFPESVHGFRCMLAVKYLQAVRESYDPSTLGYDLLSDL
FT IGVVRRTNYVEATSRYHHFHSRLESASPSELRQSRVILCTCPHCPRHKQTSGVVQQTQL
FT QEAQNLQTVSEPRCPKGV"
FT CDS 322. .1098
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="CBY85328.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPGLSSARAPTVLVTNKRRAW
FT SNRPNYRKPRIYRLYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTKGTGLTH
FT RTGKRFTIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDYRDRFQVMRKFSATVTGGPSGMKEQALVRRFFKINSQIVYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN"
FT CDS complement(550. .1032)
FT /gene="C5"
FT /product="hypothetical protein"
FT /protein_id="CBY85329.1"
FT /translation="MSTCHIQQQSILSMVLILRSFLMVINNLTVNLKKPTNKSLFLHPR
FT RTTSYSSTKLTHHLETISIIILYSSSTWLIIKHVKNLTKIHRGIPIRSSITNKEKHDIV
FT GVILLLNVLIHPYLTKNINGFDCETLSSTMSKPSSLGHIRNTTNNTSMLHIITLFI"
FT CDS complement(1095. .1496)
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="CBY85330.1"
FT /translation="MDSRTGELITAHQTENGVLIWTINNPLYFKTIKEIPLTHGNQTMV
FT EMQIRFNYNLRKELGIHKCFMNFRVWTISRPPTGLFLNVFRKQIMKYLYRIGVISINNV
FT IRAVNHVLYDVLQTTVESEFTHNIQIKLY"
FT CDS complement(1240. .1644)
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /protein_id="CBY85331.1"
FT /translation="MRPSSPSQIRCTQVPIKVQHREAKKRAIRRRRIDIPCGCTVYVAF
FT TCRDNGFTHRGTHHCASDREWRTYLDNQQSPVFQNHKGDSSNARESNNGRDADKIQLQP
FT QEGIGDSQMFHELQGLDDLTPSDWSFLKRI"
FT CDS complement(1544. .2095)
FT /gene="C1"
FT /product="Rep protein"
FT /note="Disrupted replication associated protein"
FT /protein_id="CBY85332.1"
FT /translation="MFLLFLSSSFDQVPEELEEWAAENVVEAAARPSRPISIVIEGESR
FT TGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQS
FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEDKNAHLKSWALKNATFITLSNPLYS
FT GTNQSSASGGQEESNQETQD"
FT CDS complement(2043. .2633)
FT /gene="C1"
FT /product="Rep protein"
FT /note="Disrupted replication associated protein"
FT /protein_id="CBY85333.1"
FT /translation="MAPPHRFQIYAKNYFLTFPKCSLTKEEALEQIQQISTASNKKYIK
FT ICRELHEDGQPHLHVLLQFEGKFKCQNQRLFDLVSPNRSTHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFH
FT NLNSNLERIFQEPPAPYVSPFFVFFVRPSSRRT"
FT exon complement(2043. .2633)
FT /gene="C1"
FT /number=1
FT mRNA complement(2183. .2476)
FT /gene="C4"
FT CDS complement(2183. .2476)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CBY85334.1"
FT /translation="MANLIYMCFSSSKGSSSAKIRDSSTWSPQIGQHISIQTFRELNPA
FT PTSSPTSTRMETHWNGENSRSTVDLQEEDNRPPMTLTPQRLTQEVRQRLLGL"
XX
SQ Sequence 2764 BP; 689 A; 599 C; 619 G; 857 T; 0 other;
fr751145 Length: 2764 22-JUN-2011 Type: N Check: 4676 ..
1 accggtgggc gcgaaaaaaa aagtggtccc cgccccacgt gaacatgtcg
51 cgcgagtgct gtacatgtcg cgcgatgctg tccaatcaga actcgcgctc
101 tacgcattat aatttgaaat ttgaaatata aacttgctcc ctaagtttgt
151 taggcataac tatgtgggat ccgttattga acgacttccc tgaatccgtt
201 cacggtttcc gttgtatgct agccgtgaaa tatttgcagg ctgttcgaga
251 gtcgtatgat ccttccactc ttgggtacga tcttcttagc gatctaatcg
301 gagttgttcg ccgtaccaac tatgtcgaag cgaccagcag atatcatcat
351 ttccactccc gcctcgaaag tgcgtcgccg tctgaacttc gacagtcccg
401 ggttatcctc tgcacgtgcc cccactgtcc tcgtcacaaa caaacgtcgg
451 gcgtggtcca acagacccaa ttacaggaag cccagaattt acagactgta
501 tcggagccca gatgtcccaa aggggtgtga aggtccatgt aaggtccagt
551 catatgaaca gcgtgatgat gtgaagcata ctggtattgt tcgttgtgtt
601 tctgatgtga ccaagggaac tgggcttact catcgtactg gaaagcgttt
651 cacaatcaaa tccatttata ttcttggtaa ggtatggatg gatgagaaca
701 ttaagaagca gaatcacacc aacaatgtca tgtttttcct tgttcgtgat
751 agaagaccgt atgggaattc cccgatggat tttggtcaag tttttaacat
801 gtttgataat gagccaagta ctgctactgt aaagaatgat tatcgagatc
851 gtttccaggt gatgcgtaag tttagtgcta ctgtaactgg tggtccttct
901 gggatgaagg aacaggctct tgttcgtagg ttttttaaga ttaacagtca
951 gattgtttat aaccatcagg aagctgcgaa gtatgagaac catactgaga
1001 atgctttgtt gttgtatatg gcatgtactc atgcttctaa tcctgtgtat
1051 gctacgttaa agatacggat ctacttctac gattcggtat ctaattaata
1101 taattttatt tgaatattgt gggtgaattc actttcgacg gttgtttgca
1151 atacatcgta caaaacatga ttgactgccc taattacatt attaattgaa
1201 attacgccta ttctatacaa atatttcata atctgcttcc taaatacgtt
1251 taagaaaaga ccagtcggag ggcgtgagat cgtccagacc ctgaagttca
1301 tgaaacattt gtgaatcccc aattccttcc tgaggttgta gttgaatctt
1351 atctgcatct ctaccattgt ttgattcccg tgcgttagag gaatctcctt
1401 tatggttttg aaatacaggg gattgttgat tgtccagata agtacgccat
1451 tctctgtctg atgcgcagtg atgagttccc ctgtgcgtga atccattgtc
1501 tctgcacgtg aaggctacgt atactgtgca accacaaggg atgtcaatcc
1551 tgcgtctcct gattgctctc ttcttggcct cccgatgctg aactttgatt
1601 ggtacctgag tacagcggat ttgagagggt gatgaaggtc gcattcttta
1651 atgcccagga tttgagatgc gcgttcttgt cctcgtctaa atactcttta
1701 tacgaggaat tgggacctgg attgcagagg aagattgttg ggatgccccc
1751 tttaatttga actggtttcc cgtattttgt gttgctttgc cagtcctttt
1801 gtgcacccat gaactcctta aagtgtttca gataatgcgg gtcaacatca
1851 tctatgacgt tataccatgc gtcattactg aacacttttg ggcttagatc
1901 aagatggccg cacagataat tgtgaggccc aagacttctg gcccatacgg
1951 tctttcctgt tctgctttcc ccttcaatca ctatactaat cggtctactt
2001 ggccgcgcag cggcctcaac gacgttctcc gccgcccatt cttcaagttc
2051 ttctggaact tggtcgaacg aagaagacaa aaaaaggaga aacataagga
2101 gctggaggct cctgaaaaat cctttctaaa ttactattta aattatgaaa
2151 ttgtaaaaca aaatctttgg gagctaactc ccttataacc ctaagagcct
2201 ctgccttact tcctgcgtta agcgctgcgg cgtaagcgtc attggcggtc
2251 tgttgtcctc ctcttgcaga tctaccgtcg atctggaatt ctccccattc
2301 cagtgtgtct ccatccttgt cgatgtagga cttgacgtcg gagctggatt
2351 tagctccctg aatgtttgga tggaaatgtg ttgacctatt tggggagacc
2401 aggtcgaaga gtctctgatt ttggcacttg aacttccctt cgaactggag
2451 aagcacatgt agatgaggtt ggccatcctc gtgaagctct ctgcagatct
2501 tgatatattt cttgtttgaa gctgtgctta tttgctgaat ttgctctagg
2551 gcttcttctt tggttagaga acattttggg aaagttagga aataattctt
2601 ggcatatatt tggaatctgt ggggaggagc cattgacttc gtcaatcggt
2651 actcagatgc ttctctccaa tatatcggta ctcaatatat agtgagtacc
2701 aaatggcatt ttggtaaaaa tcccaataat tttgaacccc catagcgccc
2751 accgttctaa tatt