Sequence of DPV Potato yellow mosaic Trinidad virus
Potato yellow mosaic virus, strain Trinidad, isolate Grenada:Hermitage:2007, complete DNA-B segment sequence
ACC No: FR851301
Dated: 2011-07-08 | Length: 2534 | CRC: -472533601
ID FR851301; SV 1; circular; genomic DNA; STD; VRL; 2534 BP.
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AC FR851301;
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DT 08-JUL-2011 (Rel. 109, Created)
DT 08-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Potato yellow mosaic virus, strain Trinidad, isolate
DE Grenada:Hermitage:2007, complete DNA-B segment sequence
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KW complete viral segment.
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OS Potato yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2534
RA Lett J.M.;
RT ;
RL Submitted (08-APR-2011) to the INSDC.
RL Lett J.M., Bios, CIRAD-UMR PVBMT-Pole de Protection des Plantes, 7 Chemin
RL de l'IRAT, 97410 Saint Pierre / Ile de La Reunion, FRANCE.
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RN [2]
RA Lett J.M., Perefarres F., Hoareau M., Lefeuvre P., De Bruyn A., Dottin M.,
RA Prior P., Wicker E., Umaharan P.;
RT "Tomato yellow leaf curl virus and Potato yellow mosaic virus associated
RT with tomato yellow leaf curl disease in Grenada Island";
RL Unpublished.
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CC Related sequence: FR851300
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FH Key Location/Qualifiers
FH
FT source 1. .2534
FT /organism="Potato yellow mosaic virus"
FT /segment="DNA-B"
FT /strain="Trinidad"
FT /isolate="Grenada:Hermitage:2007"
FT /mol_type="genomic DNA"
FT /country="Grenada:Hermitage"
FT /lat_lon="12.18 N 61.64 W"
FT /isolation_source="Solanum lycopersicum"
FT /collection_date="Mar-2007"
FT /db_xref="taxon:10827"
FT CDS 428. .1198
FT /gene="BV1"
FT /product="nuclear shuttle protein (NSP)"
FT /protein_id="CCA64223.1"
FT /translation="MYPTRHRRASFSSQQRIYPRNSLIRRQSLFKRHDNKRRPLQTVKM
FT VDDSMMKAQRIHENQYGPDFSMAHNTAVSTFISYPDVSKSLPNRTKSYIKLKRLRFKGI
FT VKVERVHAEVNMDCSVPKTEGVFSLVIVVDRKPHLGPSGGLPTFDELFGARIHSHGNLA
FT IVPSLKDRFYIRHVLKRVLSVDKDTMMVDIEGVATLSSRRFNCWASFKDLDIETRKGVY
FT DNISKNALLVYYCWMSDTISKASTFVSFDLDYIG"
FT CDS complement(1220. .2101)
FT /gene="BC1"
FT /product="movement protein (MP)"
FT /protein_id="CCA64224.1"
FT /translation="MNSQLVNPPNAFNYIESQRDEYQLSHDLTEIILQFPSTAAQLTAR
FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQAYWTFPIRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFSHVDYGKWERKPIRCASMSRVGLRGPIELRPGESWASRSTVGMDQSEDE
FT SEIQNELHPYRDLQRLGASVLDPGESASIVGANRAQSNITMSIAQLNELVRTTVQECIK
FT SSCNSSQPKNFK"
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SQ Sequence 2534 BP; 691 A; 502 C; 554 G; 787 T; 0 other;
fr851301 Length: 2534 08-JUL-2011 Type: N Check: 5869 ..
1 accggatggc cgcgcgattt ttttggactg ggctttctac tgaggcccat
51 ctaggattgg actcaaggcc catattggac tgatccctct ctttcctcgt
101 cctttctctg tgccttcgtt taactttaat ttaaagtagc tttaaattaa
151 atatctctct cttttattcg ggcaatttcg acagctgttc cgcattatat
201 atataatgtc gacgtgggta attctcgacc aagttacagt gattaagtcg
251 aaattttaac ttctgtccat tcatgagctc atggacttac tgagctgtac
301 attacacgtg taccatttaa attgatcgtg tggagtcaat ttaaataacc
351 gtatagccta atatgtctat atattcgctg actaagaatg agctcattat
401 tacgtggtat aaagacaata cttgataatg tatcctacta ggcacaggcg
451 tgcttctttt tctagccaac aacgtattta cccacgtaat agtttgataa
501 gacggcaatc acttttcaag cgtcatgata ataaacgacg accattacaa
551 actgtgaaga tggttgatga ctctatgatg aaggcccaac gtattcatga
601 gaatcaatac ggcccagatt tttcaatggc ccataataca gccgtttcta
651 catttattag ttatcctgat gtctctaagt ctttgcccaa tagaaccaag
701 tcatatatta agctgaaacg actacggttc aagggtattg tgaaagtgga
751 acgggttcat gcagaggtga acatggattg ctcagtgccg aagaccgaag
801 gagttttttc tttggttatt gttgtggatc gtaaacctca ccttggacct
851 tctgggggac tgcctacgtt tgacgagctg tttggcgcta ggatccacag
901 tcatggtaat ttggcaatag ttccatctct gaaggatcgg ttctacatac
951 gacatgtgct gaagcgtgtg ttgtcagtcg acaaggacac catgatggtg
1001 gacatagaag gtgttgcaac cctttctagc aggcgtttta attgttgggc
1051 tagttttaag gaccttgaca tagagactcg aaagggtgtt tatgataaca
1101 ttagcaagaa cgccctgtta gtttattatt gttggatgtc ggatactata
1151 tccaaagcat ccacatttgt atcgtttgac cttgattata ttggatgaat
1201 gtacatatta ataaaaattt tatttaaaat ttttgggctg agaactatta
1251 caactactct ttatacattc ttggacagtt gtccttacaa gttcgtttaa
1301 ctgggctatg gacatggtta tgttcgactg ggccctgttt gcaccaacta
1351 tagatgcaga ctctcccggg tctaggacac ttgctcctag cctttgcaga
1401 tctcgatacg gatgtaactc gttctgtatc tccgactcgt cctctgattg
1451 atccattcct actgtgctcc tggaagccca tgactcaccg ggccttaatt
1501 ctattgggcc tctgagccca actctagaca tggatgcgca tcgtatgggc
1551 ttcctctccc atttcccgta gtcgacgtgc gagaagtcca catccttatc
1601 tgtgaactgt ttggacaaga tcttcaccgt tggtgctctg aacggaatat
1651 caactgaatg tttcgccgtc gacaatttca gcttcccttt gaacttggca
1701 aagtgtgtcc gctgatgaac gtttgtgtca gaaactctgt aatagagttt
1751 ccatgggata ggatctttta gggagaaaaa ggaagctgag aaatagtgga
1801 gatctatgtt gcatcttatc gggaacgtcc aatacgcctg aagtgattcg
1851 ttgtcagtca tcctcttgtc atgaatctcc actattacag aaccggtggc
1901 gttgatgggt acctgctgcc tgtactcaat tacgcagtgg tctatcttca
1951 tacagctgcg actgagtctc gccgttaact gcgccgccgt cgaaggaaat
2001 tgcagtatta tctcagttag gtcatgggaa agctgatatt catcccgctg
2051 agactctata taattgaaag cattaggagg attaactaac tgagaattca
2101 tttatggaaa ttaggccgcg cagcggcacc gcttcgagaa aatgaacagg
2151 aaaacagatt attagggttt cgtcagaaag ttaaagaatt atcataatcg
2201 tcgagggtga ctctcgaacg ggcaagacga tgctctcgga gagaatatag
2251 agagagaaag gtgtgatata gaagagtttg aatatgataa gtttgaataa
2301 ttaggttgtt tatatagaca agatgataat aatgcggtag taattaaaat
2351 atgtcagata ataaatataa gtttaattac agaagaaacc ctagtggcat
2401 ttttgtaata aaggctgtgt acaccgattg gagctctttc aaacttactc
2451 attcaatcgg tgtattgggg tactatatat actataaccc tcattagagg
2501 atcttgacac gtggcggcca tccgctataa tatt