Sequence of DPV Citrus tristeza virus

Citrus tristeza virus strain TAPI-PSTS P18 protein (p18) gene, complete cds.

ACC No: GQ119003

Dated: 2010-12-29 | Length: 508 | CRC: 77981827

                
ID   GQ119003; SV 2; linear; genomic RNA; STD; VRL; 508 BP.
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AC   GQ119003;
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DT   03-MAY-2010 (Rel. 104, Created)
DT   29-DEC-2010 (Rel. 107, Last updated, Version 2)
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DE   Citrus tristeza virus strain TAPI-PSTS P18 protein (p18) gene, complete
DE   cds.
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KW   .
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OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
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RN   [1]
RP   1-508
RA   Raspagliesi D., Lombardo A., Rizza S., Catara A.;
RT   "Application of Capillary Electrophoresis-Single-Strand Conformation
RT   Polymorphism Analysis for rapid identification of citrus tristeza virus
RT   strains and characterization";
RL   Unpublished.
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RN   [2]
RP   1-508
RA   Raspagliesi D., Lombardo A., Rizza S., Catara A.;
RT   ;
RL   Submitted (05-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Parco Scientifico e Tecnologico della Sicilia, Blocco Palma I Z.I.,
RL   Stradale Vincenzo Lancia, Catania 95131, Italy
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RN   [3]
RC   Sequence update by submitter
RP   1-508
RA   Raspagliesi D., Lombardo A., Rizza S., Catara A.;
RT   ;
RL   Submitted (28-DEC-2010) to the EMBL/GenBank/DDBJ databases.
RL   Parco Scientifico e Tecnologico della Sicilia, Blocco Palma I Z.I.,
RL   Stradale Vincenzo Lancia, Catania 95131, Italy
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CC   On Dec 28, 2010 this sequence version replaced gi:266635359.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .508
FT                   /organism="Citrus tristeza virus"
FT                   /strain="TAPI-PSTS"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12162"
FT   gene            5. .508
FT                   /gene="p18"
FT   CDS             5. .508
FT                   /codon_start=1
FT                   /gene="p18"
FT                   /product="P18 protein"
FT                   /db_xref="InterPro:IPR008452"
FT                   /db_xref="UniProtKB/TrEMBL:D6MJ14"
FT                   /protein_id="ACY78294.2"
FT                   /translation="MSGSLGNSTHVDLLRSDSRFLSGWWSFIVNVGDIIVRFALHVPNE
FT                   DMLNSFSAISNCTIIADGSALLKDNTVVDRLESMNPLAYLLKLAKTTTTICFTMSNKVL
FT                   FGTTKSEPLSCLAITSDRVLFKVIMGANVDDSRCGCSIWFYNNGTFQNGLTRCNNLVTL
FT                   FSVT"
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SQ   Sequence 508 BP; 128 A; 89 C; 114 G; 177 T; 0 other;

gq119003 Length: 508  29-DEC-2010  Type: N  Check: 5793  ..

       1  gattatgtca ggcagcttgg gaaattcaac acacgttgat ctattgcgtt
      51  ccgattcccg gtttctatcg ggatggtgga gtttcatcgt gaacgtgggt
     101  gatataattg tccggttcgc gttacacgtt cctaatgaag atatgctgaa
     151  tagtttttca gctatatcga attgtacgat tatagcggat ggtagtgctt
     201  tactaaagga caatactgtg gttgaccgtt tagaaagcat gaatcctttg
     251  gcttatttgt taaaattagc gaaaacgact actactattt gttttaccat
     301  gtccaataag gttctttttg gtactaccaa atccgaacca cttagttgtt
     351  tagctatcac gtcggatcga gttttattca aagttattat gggcgctaac
     401  gttgatgatt ctcggtgcgg ctgcagtatt tggttttaca acaatggtac
     451  gtttcaaaac ggattgaccc gttgtaataa tctcgtcact ttgtttagcg
     501  tgacttag