Sequence of DPV Alternanthera mosaic virus
Alternanthera mosaic virus isolate SP 3-1, complete genome.
ACC No: GQ179646
Dated: 2009-12-25 | Length: 6607 | CRC: -1184335951
ID GQ179646; SV 1; linear; genomic RNA; STD; VRL; 6607 BP.
XX
AC GQ179646;
XX
DT 17-SEP-2009 (Rel. 102, Created)
DT 25-DEC-2009 (Rel. 103, Last updated, Version 2)
XX
DE Alternanthera mosaic virus isolate SP 3-1, complete genome.
XX
KW .
XX
OS Alternanthera mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6607
RX PUBMED; 20019006.
RA Lim H.S., Vaira A.M., Reinsel M.D., Bae H., Bailey B.A., Domier L.L.,
RA Hammond J.;
RT "Pathogenicity of Alternanthera mosaic virus is affected by determinants in
RT RNA-dependent RNA polymerase and by reduced efficacy of silencing
RT suppression in a movement-competent TGB1";
RL J. Gen. Virol. 91(PT 1):277-287(2010).
XX
RN [2]
RP 1-6607
RA Hammond J., Lim H.-S., Reinsel M.D.;
RT ;
RL Submitted (19-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Floral and Nursery Plants Research Unit, National Arboretum, US Department
RL of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD
RL 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6607
FT /organism="Alternanthera mosaic virus"
FT /host="Phlox stolonifera cv. Sherwood Purple"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="SP 3-1"
FT /mol_type="genomic RNA"
FT /country="USA:Maryland"
FT /collection_date="2007"
FT /db_xref="taxon:85454"
FT 5'UTR 1. .94
FT CDS 95. .4720
FT /codon_start=1
FT /product="replicase"
FT /db_xref="UniProtKB/TrEMBL:C9D744"
FT /protein_id="ACS28228.1"
FT /translation="MAHFRSVLDQMNDPSLRAVIQEEAYREIKKTIAETKQYNPYAQDP
FT AAADSLEKLGIESNPFSVRAHTHAAAKSIELDMYKITGYSLPKENPITFLFMKRSKLQY
FT FHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTLHFLPLGAIRE
FT IFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYS
FT QLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVT
FT LPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKE
FT LALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEA
FT LEWVDVSLSYKVETYSQANPNNQPKVMFGYEWLSTETGTPGTEEDAAPETPQEDEDPHE
FT RYIQALQTLTKALDQESAPPPTEPAQCSSTSNPQQEEHFRPPHNLHTDETPSCSGSSNS
FT FACHCPCGTELKVFSAEFPPIPPLSHGDRLKNREAFFFSRDGTPYSYTGGSHASRGWPT
FT FLDQILATAELVRPLPHFNQCLIQKYQRGASIPFHRDDEPCYDADHQVLTINLTGEAEF
FT KISCKAGSGSCTLVENQFHLSPPGFQKTHKHSVVSLSAGRVSLTFRSTVKQSVTSEEGD
FT CVEPDNLPWKAWLGKLRNLGFRGMQLQYDPNGALISPIESVKSLPKCSPEKVDPSLLKM
FT LDNQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLAIS
FT VIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKALL
FT APTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF
FT TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKE
FT AFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNN
FT QAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLD
FT QMREKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIEARLVISNPKANW
FT QEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLAKPINMLKNGQA
FT RQSPDYDPNMISLFLKSQWVKKMEKLGALRIKPGQTIASFHQATVMLFGTMARYMRRMR
FT EIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDGAMLQFEVLK
FT AKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPK
FT GTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGF
FT IKDPKKLHASLVLEKKRGNLKNVLRSYELDLALAYQHRDELHELLSEEELRLHYDTVRT
FT LVKSGGGEVLKTFLSKDESLY"
FT CDS 4704. .5402
FT /codon_start=1
FT /product="TGB1"
FT /db_xref="UniProtKB/TrEMBL:C9D745"
FT /protein_id="ACS28229.1"
FT /translation="MNHFTNLLIEEGYVRTNEILSDTLVVHAVAGAGKSTLIRKFIHQH
FT PQARAYTHGVPDPPNLEGRFIQAFKNPDPNHFNILDEYCAEPPSGSWNVLIADPLQHRS
FT QALRPHYIKRESHRLGVATCELLTRVGLPVLSNKTEDQVDYQGIFEGPLFGTVIALDST
FT VRALLVKHGIPPLCPAEVLGSEFEQTTVVSEVPLSQVKFKHALYIALTRHKKSLHVRAP
FT PLPDTPRRLL"
FT CDS 5356. .5688
FT /codon_start=1
FT /product="TGB2"
FT /db_xref="InterPro:IPR001896"
FT /db_xref="UniProtKB/TrEMBL:Q52Z63"
FT /protein_id="ACS28230.1"
FT /translation="MSGLPHSLTPPADYSKPVLAAAVGVSLALVINSFLVYRLPSPGDN
FT IHQLPFGGSYRDGTKSIHYNSPRAQSQISGASPFLIILILSALIYALSCRGGHHRARLH
FT RCPCCS"
FT CDS 5624. .5815
FT /codon_start=1
FT /product="TGB3"
FT /db_xref="InterPro:IPR003411"
FT /db_xref="UniProtKB/TrEMBL:Q52Z62"
FT /protein_id="ACS28231.1"
FT /translation="MPYLVEAAITVLACIGVLAALRPGSHPCTILLTGHSATISGNCGP
FT VAPETIRALGDYLTGLRF"
FT CDS 5858. .6481
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="UniProtKB/TrEMBL:Q52Z61"
FT /protein_id="ACS28232.1"
FT /translation="MSTPFPQVTQEQMNAFTPHTTSNLLPSPEQLTTIANLLVAAKVPA
FT ASTTTIALELVNFCYDNGSSTYTAVVGPSSLAEVSLSQVANIVKASGTSLRKFCRFFAP
FT IIWNLRTDKTPPANWEANGFKPTEKFAAFDFFDGVENPAAMQPPGGLVRTPSQAERIAN
FT ATNKQVNLFQAAAQDNNFASNSAFITKGQLSSNSPTIQYLPPPE"
FT 3'UTR 6482. .6607
XX
SQ Sequence 6607 BP; 1770 A; 1917 C; 1497 G; 1423 T; 0 other;
gq179646 Length: 6607 25-DEC-2009 Type: N Check: 9151 ..
1 gaaaagtaaa gcaaagcaaa gcaaagcaaa ggaaccgaaa gtccatattt
51 gcccttcgag gagatcgatt acccatcccg gctagatcaa cagtatggcc
101 cactttcgtt ccgttcttga ccaaatgaat gaccccagcc ttcgggcggt
151 catccaggaa gaagcttacc gcgaaataaa gaaaaccatc gcggaaacca
201 aacagtacaa cccttacgcc caggatccag cggcggctga ctcattagaa
251 aaattaggaa tagaatctaa ccccttctca gtccgcgctc atacacacgc
301 ggccgcgaag tcaatagaat tagacatgta caaaatcacg ggttactccc
351 tcccgaagga gaatccaatt actttccttt tcatgaagag gtccaaactt
401 caatacttcc acagaggccc acagcatgga gacttattcc ttaatgcttg
451 tattgagcca aaggacgtca ccaggtacgc cttagaagac ctctttaaac
501 cctccacaac cccagaaatc caaaccagag tggcattcat tggagacaca
551 ctacacttcc ttcctctagg ggccatcaga gagatattta caagctcaca
601 aaagctccaa actctctatg caacaatggt actacccccc gaagccatgc
651 acagaatgca ctcaattcac cccagcatct acgagctaga attccatgaa
701 aaaaatttta tatacaagcc gggaggacat gccggggcgt cttattgcca
751 cgaatactca caacttcagt ggctcaaggt cggaaaattt gagtggtgcg
801 acaagaaata tcagaagcac tacgtgacat cacagattct ggaaaccaag
851 ggtgcaaatc acctttttgt gttccagcgc ggcaatttcg ccacccctac
901 ctaccgaact ttcggggtag agacaaaatt tgtcacactc ccacccatat
951 tcctcccaaa gaaatacaac gcgcggtacc cgataaagaa aactgtggcg
1001 cagcagctat ttctttacat caagtccgtg aaaacagtca cggagagaga
1051 catctgggcc aaagttagac agatcataaa gaccgctgag ctccaaagct
1101 actcggcaaa agagctcgca ctcattgtca actactactt gctcatctct
1151 aagctggact cggtcacatg ttttgacaat gtgctcacag ggggtgtgct
1201 caagaagctc tttaaaccca tcgtggcttg gtggtccacc ttcaaaggga
1251 agatcttcgg gaaggaggag ttcgaacaac ttatggaggc gcttgagtgg
1301 gtcgacgtgt cactgtccta caaagtggag acatacagcc aggccaaccc
1351 aaacaatcag cccaaggtga tgttcgggta cgagtggctc agcacagaaa
1401 cgggaacccc aggaacagag gaggacgccg ctcccgaaac cccacaagag
1451 gacgaggacc cacatgaaag atatatccag gccctccaaa cactgacgaa
1501 ggccctcgac caggagagtg ctccaccacc aacagaacca gcccagtgct
1551 ccagcaccag taatccacaa caggaggagc acttccgccc accccacaac
1601 ctccacactg atgaaacccc aagctgctca ggaagctcga attcctttgc
1651 ttgccactgc ccgtgcggca cggaactcaa agttttctca gccgagtttc
1701 cacccattcc cccactatcg cacggcgatc ggctcaagaa cagggaagca
1751 ttcttctttt cgagagatgg tactccctac agctacactg ggggttccca
1801 cgcatccaga ggatggccga ctttccttga ccagatcctg gccactgctg
1851 agttggtgag gcccctcccc cacttcaacc aatgcctcat ccaaaaatac
1901 caaagaggcg cctccatccc cttccacaga gacgacgagc catgctacga
1951 tgcggaccac caagtgctca caatcaacct caccggtgaa gcagaattca
2001 aaatcagctg caaagctggt tcagggagtt gcacgttagt agagaaccag
2051 ttccacctgt ccccccccgg tttccaaaag acacacaagc acagtgtggt
2101 ctcacttagc gcggggcgag tctccctcac attccgctcc actgtcaagc
2151 agagcgttac ctctgaagag ggtgactgtg tagaacccga caatctgccg
2201 tggaaggcct ggctcggaaa gctgagaaac ctgggcttca ggggcatgca
2251 gctgcaatac gatccaaatg gggccttgat ctcaccaatc gaaagcgtca
2301 agtcactccc gaagtgctcc ccggaaaagg tcgacccctc cctcctcaaa
2351 atgctagata atcaggctcg cgcaccaact ccattctcgc ccagccccat
2401 cagggcaaaa gcttactcct cagacgtcaa aaactctcga attggcgcat
2451 tactccgaca gcagggcaaa gattggggcc accgcttcga ttcacttgtg
2501 gagaatgggc agaggcagct agccatcagt gtgatccatg gggccggtgg
2551 ctctgggaaa tcgagggcgt tgcagatgta cctgaaggac aacccagatg
2601 ctgatgtcac gatagtgcta ccaactaacg agctgaggct cgactggctg
2651 aagaagttgc ccaccttccc ggcagaccag atcaaaacct tcgagaaggc
2701 cctgctggct cccacaaagc ccacagttat cttcgatgac tacggcaaac
2751 tgccagccgg gtacattgaa tccttctcat tctacatgtc atcagctgag
2801 cttctggtgc tcaccggtga ctccaagcag agcgtgcatc acgagtctaa
2851 tgagaatgcg atgagcagcc tcatcgaacc cttcactctg gaagctgata
2901 agtactcacg ctattacatc aatgccacac acagaaacaa gcgtgatttg
2951 gccaacaagc taggggtcta ctcagaggtc acggggataa catccatcac
3001 ccaaggcaac caccctgtgc cgggacttca cctgctcgtc ccctcactct
3051 acaagaagga ggctttcagc gaaatgggtc acaaggtttc cacttatgcg
3101 ggctgtcagg gcctcacagc cccacgcgtg caaattctgc tctcagaaga
3151 gactagcatg tgttcccgcg aagtcattta caccgccctc tcccgagccg
3201 ttcactccat tcactttgtc aactgcggcc caaacaatca ggctttctgg
3251 gccaagctgg agagcacacc ttacctgaaa gctttcctct ccacgctccg
3301 agaagacgcg gcacctgtcg tgaaaccgaa agaggaagca ccagctccag
3351 ttgatccccc aaagacccac atcccagttg actcagccat gccaatttat
3401 gaggacttac tggatcagat gcgggaaaag catgagaggg agatcttttc
3451 agaaaagcat gggcacagca attgcgtgca aacggaggat acctttgtgc
3501 aaatgttcag tcaccagcag gctaaggacg aaacccttct ctgggctacc
3551 atcgaggcga gactggtcat ttccaacccc aaggccaatt ggcaagaatt
3601 catggagaaa agaccgattg gagatgtgct ctttggtttc tacagagaag
3651 cgatggggct gcccactgaa cctattgcct ttgaaccaca gctttgggag
3701 tcttgcatcc atgaggtcca gcgtacctac ttggcaaagc ccatcaacat
3751 gctgaagaat ggacaggctc ggcaatcccc cgattatgat ccaaacatga
3801 tatctctctt tctgaagtcc cagtgggtga agaaaatgga gaagttgggc
3851 gccctaagga tcaagcccgg acaaactatt gcctccttcc accaggccac
3901 tgtcatgctg ttcggcacga tggctaggta catgaggaga atgcgggaaa
3951 tcttccagcc taagaacatt gccatcaact gcgagatgac cccagaagat
4001 ctcacagatt gggccgtggg ttctgccggc cagtggaaat tcgccggccc
4051 ttctttagcc aatgacttca cagcattcga tcagtcacaa gatggggcga
4101 tgcttcagtt tgaggtcctc aaagccaaac accacagcat tccagaggat
4151 gtcttggacg cttacctaca catcaaaaca aactcgaaga tcttcttggg
4201 tacattgacc attatgagac tcacgggtga gggccccact ttcgatgcaa
4251 acactgagtg caacatcgct ttcacccatg caaaatttca gattccaaag
4301 ggtacagccc agctttacgc gggggatgac tcggcaattg atggcaaccc
4351 cccagtgaga gagagcttca gattggttga gcagaaattg aagctgaggt
4401 caaaaccggc gatcgcgatg caggaaaaag gagactgggc agaattctgt
4451 ggatacagga ttacgcccaa aggtttcatc aaggatccaa agaaacttca
4501 cgcgagtctg gtgcttgaaa agaagagagg taatttgaag aatgtgctga
4551 ggtcctatga gcttgacctg gcattggcat atcagcaccg ggatgaactt
4601 cacgaattac tctctgagga ggagctgcgt cttcactacg acacggttcg
4651 tacgctagtt aagtcaggtg gaggagaggt tttgaaaact tttctttcca
4701 aagatgaatc actttactaa cctcctcatt gaagagggtt acgtccggac
4751 gaacgaaatc ctctcagata ctctagtcgt ccatgctgta gctggcgctg
4801 gcaagtccac cctcatccgc aaattcatcc atcagcatcc acaggcccgt
4851 gcgtacaccc acggagtccc tgacccccca aatctcgaag gccgattcat
4901 tcaggctttt aagaaccctg acccaaacca cttcaacatc cttgacgagt
4951 attgcgcaga acctccaagc ggcagttgga acgtgctcat cgccgacccc
5001 ctgcaacata gatctcaagc tcttcgaccc cactacatca aaagagagtc
5051 ccacaggcta ggagtagcca cgtgtgaact tctcaccaga gtggggcttc
5101 cagttttgtc caacaagact gaggatcaag tcgattacca gggcattttc
5151 gaagggcccc ttttcggcac cgtgattgct ctggactcca ctgtcagagc
5201 cctcctcgta aagcacggaa ttccaccact ctgccctgct gaggtcctcg
5251 ggtctgagtt tgagcaaacg acagtagtct cggaggttcc gcttagccag
5301 gtcaagttca agcacgctct gtacatcgct ctcacccgcc acaagaagtc
5351 tctccatgtc cgggctcccc cactccctga caccccccgc cgattactct
5401 aagccagtgc ttgcagcagc agtaggagtt agtttagctt tagtaataaa
5451 ctctttcttg gtctataggc ttccctcgcc cggggacaat attcatcaac
5501 tgccctttgg aggttcctac cgggacggaa ctaagagcat ccactacaat
5551 tcgcctaggg cccagagtca gatctcaggt gcgtcaccgt tcctgataat
5601 cctgatactc tcagccctca tctatgccct atcttgtaga ggcggccatc
5651 accgtgctcg cttgcatagg tgtccttgct gctcttaggc cagggtccca
5701 tccttgcacc attctgctaa ctggacactc tgcgaccatt agcggaaact
5751 gtggacctgt cgcaccagag accatcaggg ctcttggaga ctacttaacc
5801 gggcttaggt tttagcatta gtttgattat cctatcgtca tcctagttga
5851 agtcatcatg tctacaccat ttcctcaagt cactcaggaa cagatgaacg
5901 ccttcactcc acataccaca tccaatctcc ttccatcacc ggagcagttg
5951 accaccattg ccaacctctt ggttgctgcc aaggtgcctg ccgcctcaac
6001 cacgaccatt gccctggagc ttgttaactt ctgttatgac aatggctcca
6051 gtacttacac agcggtggtg ggcccttctt cacttgcaga ggtctcactc
6101 tcccaggtcg ctaacatcgt caaagcctca ggcacctctc tccgcaaatt
6151 ctgcagattc tttgctccaa tcatctggaa cctcagaaca gacaagacgc
6201 ccccagccaa ctgggaagcc aatgggttca aaccgacaga gaagtttgca
6251 gccttcgatt tcttcgatgg agtggaaaat ccggcggcca tgcagccacc
6301 aggagggttg gttaggactc ccagccaagc agaaaggatc gccaacgcca
6351 ctaacaagca ggtaaacctc tttcaggccg cggcacagga taataacttc
6401 gccagcaact ctgcattcat caccaagggc caattgtcct ccaactcacc
6451 aaccattcaa tacctcccac cacctgagtg atttctccac ccagttcaag
6501 cccgttgttt tcgcaatttt gttggggcta tcgagttttc aaaattgctt
6551 ccgcttctgt agacctaaat tacagcctag tgtgcggttt aatacctatt
6601 tacgcac