Sequence of DPV Sunn hemp leaf distortion virus
Sunn hemp leaf distortion virus [India:Barrackpore2:2008] segment DNA-A, complete sequence.
ACC No: GQ183867
Dated: 2009-07-05 | Length: 2774 | CRC: 1970133426
ID GQ183867; SV 1; circular; genomic DNA; STD; VRL; 2774 BP.
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AC GQ183867;
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DT 05-JUL-2009 (Rel. 101, Created)
DT 05-JUL-2009 (Rel. 101, Last updated, Version 1)
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DE Sunn hemp leaf distortion virus [India:Barrackpore2:2008] segment DNA-A,
DE complete sequence.
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KW .
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OS Sunn hemp leaf distortion virus [India:Barrackpore2:2008]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2774
RA Das A., Ghosh R., Roy A.;
RT "Characterization of Begomovirus complex associated with leaf distortion
RT disease of Sunn hemp from India";
RL Unpublished.
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RN [2]
RP 1-2774
RA Das A., Ghosh R., Roy A.;
RT ;
RL Submitted (22-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Crop Protection, Central Research Institute for Jute and Allied Fibres,
RL Nilgunj, Kolkata, West Bengal 700120, India
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FH Key Location/Qualifiers
FH
FT source 1. .2774
FT /organism="Sunn hemp leaf distortion virus
FT [India:Barrackpore2:2008]"
FT /segment="DNA-A"
FT /host="Crotalaria juncea"
FT /isolate="Barrackpore2"
FT /mol_type="genomic DNA"
FT /country="India:Barrackpore"
FT /collection_date="2008"
FT /clone="SHLD-FL-Bar-02"
FT /db_xref="taxon:655842"
FT gene 147. .503
FT /gene="AV2"
FT CDS 147. .503
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ACS92543.1"
FT /translation="MWGSISKRVSRNRSRFYMSVSSYISPVSRKDLFSSHIRARFNLGF
FT NFSNYGKKLCRSDQQIYSFPRPLRRYAAVSTSTAHMCAVLLPPLSASPKQKHGRTGPRT
FT ESPGCTGCTEVQMS"
FT gene 308. .1081
FT /gene="AV1"
FT CDS 308. .1081
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ACS92542.1"
FT /translation="MSKRPADIFISTPASKVRRRLNFDSPYVCRAAAPIVRVTKAKAWA
FT NRPTNRKPRMYRMYRSPDVLGGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYLIIMLFITSKKLAS
FT MRIILRMRYCCIWHVLMPLTQCMLLWRYGSISMIP"
FT gene complement(1086. .1490)
FT /gene="AC3"
FT CDS complement(1086. .1490)
FT /codon_start=1
FT /gene="AC3"
FT /product="transcription enhancer protein"
FT /protein_id="ACS92544.1"
FT /translation="MDSRTGELITAAQAEIGVFIWEIQNPLYFKILEHQNRPFLINQDT
FT RTVRIQFNHNLRKALGIHNCFLFYRIWMSSQPQTGRFFWVLKTEVFKYLDNLGIISINN
FT VNRAVDHVLWNVLQHIVYVDQSYSITFNIY"
FT gene complement(1225. .1650)
FT /gene="AC2"
FT CDS complement(1225. .1650)
FT /codon_start=1
FT /gene="AC2"
FT /product="replication enhancer protein"
FT /protein_id="ACS92545.1"
FT /translation="MGFTECDLRHPRRPTLLRYQSKCSTGYPRRGPDVDVFDSLVDIHI
FT SYHSPVHDHGFTHRGTHHCSSSRDWRVYLGDSKSPLFQDTRAPEPSISHQPRYKNRPNT
FT VQSQPKESTGDSQLFPILPNLDVFTASDWSFLLGLKD"
FT gene complement(1538. .2623)
FT /gene="AC1"
FT CDS complement(1538. .2623)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication initiator protein"
FT /protein_id="ACS92546.1"
FT /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPTNKKYIKI
FT CRELLENGEPHLHVLLQFKGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLE
FT KDGRHPRLGESFRSMEDLQEGVNRQPMPLTPQHLSQAVRQRLLQSCRNQHLKIVYYNFI
FT IYLLILIEYLLLLSRNIFLLFLLLLLTKFQRNLKNGLLRKWCVPLRGLSDPSVLSQRVI
FT VERGRPRGLGLWVHIITCVVTLTLVLRSTIMMRGTTSLMTLIRIISSTLRNSSGPKGTG
FT KATRNTESQFKLKAEFPLSSSAIQDPTQAIKSSWMKRKIAHLKNGLYRMRSSSPSKAHS
FT TQVPIKVQHRLPKKGTRRRRV"
FT gene complement(2158. .2469)
FT /gene="AC4"
FT CDS complement(2158. .2469)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4"
FT /protein_id="ACS92547.1"
FT /translation="MGNLIFTCSSSSRGNTSARITDSSTWYPQPDQHISIRTFRELNQA
FT RTSSPTWRRTGDTLDWGRVSDRWKICKRGSTDSQCRLRRSTYRRQYVRGSYSLAGIST"
XX
SQ Sequence 2774 BP; 762 A; 555 C; 636 G; 821 T; 0 other;
gq183867 Length: 2774 05-JUL-2009 Type: N Check: 4899 ..
1 accggatggc cgcgcaaatt tttaaagtgg tcccccccac taactcatgt
51 cgcgtaacac gtggacgaat gaaatgagct cctcgtggct taattatttt
101 gtggtcccct atttaaactt ccgcagcaag tagtgcattc cgcactatgt
151 ggggatccat tagtaaacga gtttcccgaa accgttcacg gttttacatg
201 tctgttagca gttatatatc tccagttagt agaaaagact tattctcctc
251 acacattagg gcacgattta atttgggatt taatttcagt aattacggca
301 agaaattatg tcgaagcgac cagcagatat attcatttcc acgcccgctt
351 cgaaggtacg ccgccgtctc aacttcgaca gcccatatgt gtgccgtgct
401 gctgccccca ttgtccgcgt caccaaagca aaagcatggg cgaacaggcc
451 cacgaacaga aagcccagga tgtacaggat gtacagaagt ccagatgtcc
501 taggaggatg tgaaggccca tgtaaggtcc agtcttttga gtccagacat
551 gatattcagc atataggtaa agtcatgtgt gtcagtgatg ttacgcgtgg
601 aactgggctg acccatcgag tgggtaaaag gttttgtgtt aaatctgttt
651 atgtcttggg taagatctgg atggacgaaa atattaagac caaaaatcac
701 acgaatagtg tgatgttttt tttagttagg gatcgtagac ctgtggataa
751 acctcaagat tttggagagg tttttaacat gtttgataat gagcccagta
801 cggctactgt gaagaatgtt catcgtgata ggtatcaagt tcttcggaag
851 tggcatgcaa ctgtgactgg tggacaatat gcgtcaaagg aacaagctct
901 cgtgaagaag tttattaggg ttaataatta tttaataatt atgttgttta
951 taaccagcaa gaagctggca agtatgagaa tcattctgag aatgcgttat
1001 tgttgtatat ggcatgtact catgcctcta acccagtgta tgctactttg
1051 gagatacgga tctatttcta tgattccgta acaaattaat aaatattaaa
1101 tgttattgaa taagattggt ctacatatac aatatgttgt aatacattcc
1151 ataatacatg atcaactgca cgatttacat tattaatact gataattcct
1201 aaattatcta aatatttaaa tacttcagtc tttaagaccc aaaagaaacg
1251 accagtctga ggctgtgaag acatccagat tcggtagaat aggaaacagt
1301 tgtgaatccc cagtgctttc cttaggttgt gattgaactg tattcggacg
1351 gttcttgtat cttggttgat gagaaatgga cggttctggt gctcgagtat
1401 cttgaaataa aggggatttt gaatctccca gataaacacg ccaatctctg
1451 cttgagctgc agtgatgagt tccccggtgc gtgaatccat gatcgtggac
1501 aggcgagtgg tatgaaatat gaatatccac aagggagtca aacacgtcga
1551 cgtctggtcc ccttcttggg tagcctgtgc tgcactttga ttggtacctg
1601 agtagagtgg gccttcgagg gtgacgaaga tcgcattctg taaagcccat
1651 tttttaagtg cgctattttt ctcttcatcc aagaactctt tatagcttga
1701 gttgggtcct ggattgcaga ggaagatagt gggaattccg cctttaattt
1751 gaactggctt tccgtatttc gtgttgcttt gccagtccct ttgggccccg
1801 atgaattcct taaagtgctt gaaataatcc ggatcaacgt catcaatgac
1851 gttgtaccac gcatcattat tgtagacctt aggactaagg tcaaagtgac
1901 cacacaggta attatgtgga cccaaagacc tagcccacgt ggtcttcccc
1951 gttctactat caccctctgt gacaatacgc ttgggtctga aagtccgcgc
2001 agcggcacac accactttct cagcagccca ttcttcaagt tcctctggaa
2051 cttggtcaaa agaagaagaa gaaaaaggag aaatatattc ctcgatagga
2101 ggagtaaata ttctatcaaa attagcagat agattatgaa attgtaatac
2151 acaatcttta ggtgctgatt cctgcaagac tgtaagagcc tctgacgtac
2201 tgcctgcgat aagtgctgcg gcgtaagcgg cattggctgt ctgttgaccc
2251 cctcttgcag atcttccatc gatctgaaac tctcccccag tcgagggtgt
2301 ctcccgtcct tctccaggta ggacttgacg tccgagcttg atttagctcc
2351 ctgaatgttc ggatggaaat gtgctgatct ggttggggat accaggtcga
2401 agaatctgtt attctggcac ttgtatttcc ccttgaactg gaggagcacg
2451 tgaagatgag gttccccatt ttcaagaagc tctctgcaga tcttgatgta
2501 ttttttattt gttggggttt gtaggttttg aaattgggaa agtgcttcct
2551 ctttagtaag agagcatttc ggataagtga gaaaataatt tttagagtta
2601 atgaggaaac gcttgggagg catgttgact aaaatagagg acccgattga
2651 ccgctcttgc aactctcccc tgtatattgg gtctcaatat atagtgagac
2701 ccaaatggca tattcgtaat ttggtaaagg aattcaaaat ttacacgctc
2751 caaagcggcc atccgtataa tatt