Sequence of DPV Rice stripe virus
Rice stripe virus isolate MA-JN segment RNA2, complete sequence.
ACC No: GQ229107
Dated: 2010-06-02 | Length: 3514 | CRC: -79701379
ID GQ229107; SV 1; linear; genomic RNA; STD; VRL; 3514 BP.
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AC GQ229107;
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DT 02-JUN-2010 (Rel. 105, Created)
DT 02-JUN-2010 (Rel. 105, Last updated, Version 1)
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DE Rice stripe virus isolate MA-JN segment RNA2, complete sequence.
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KW .
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OS Rice stripe virus
OC Viruses; ssRNA negative-strand viruses; Tenuivirus.
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RN [1]
RP 1-3514
RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.;
RT "Sequence and phylogenetic analyses of the complete sequence of RNA1 and
RT RNA2 segments of Korean Rice stripe virus isolates and with those reported
RT isolates from China and Japan";
RL Unpublished.
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RN [2]
RP 1-3514
RA Jonson G.-M., Kim K.-H., Choi H.-S., Kim J.-S., Choi I.-R.;
RT ;
RL Submitted (29-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultural Biotechnology and Plant Genomics and Breeding
RL Institute, Seoul National University, 599 Gwanak-ro, Daehak-dong,
RL Gwanak-gu, Seoul 151-921, South Korea
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FH Key Location/Qualifiers
FH
FT source 1. .3514
FT /organism="Rice stripe virus"
FT /segment="RNA2"
FT /host="Oryza sativa japonica"
FT /isolate="MA-JN"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="2007"
FT /db_xref="taxon:12331"
FT CDS 81. .680
FT /codon_start=1
FT /product="NS2"
FT /protein_id="ADE60722.1"
FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI
FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL
FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV
FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM"
FT CDS complement(980. .3484)
FT /codon_start=1
FT /product="putative membrane glycoprotein"
FT /protein_id="ADE60723.1"
FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC
FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY
FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ
FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI
FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL
FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED
FT SIAPNTNVSDKAKRKGRKVEDGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS
FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK
FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI
FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA
FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE
FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER
FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF
FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS
FT IIPIGLILKTIRSFLDDIRQVD"
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SQ Sequence 3514 BP; 1074 A; 746 C; 632 G; 1062 T; 0 other;
gq229107 Length: 3514 02-JUN-2010 Type: N Check: 7109 ..
1 acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga
51 aatcgtccac ggagaatctc gtcttcagca atggcattac tcctcttcaa
101 tgatcactac tatggttttc tccataagta taaaagacat actggatcat
151 atgataatct cttcaatttg aggtgctcta aagaagacca ctatttgaac
201 tctcttgatg ccatctggct catgggatgc tgtgaggagt tcacagatcc
251 agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt
301 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc
351 tgtaaaaaac catctcatca acagactgag catctgaaac tgatcctgtt
401 acccaacttg gtcaacgggt ttcagtttgc tacagagtca tatcacatat
451 gcctgaagga tcactctgga gatgacccta cacaatatct tagtgagttc
501 tcctttccca caggattaag agcctactac aagccacatc agaagatgga
551 gcataaacat atagttgtaa ccaatggaat acccatctca aagaatttca
601 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt
651 ggagcacatg agtgccctat tctaatgtga acttggaaga tgatatagac
701 tgtggcttac aggcacatac acacactgga cacaaacact acaatggtgc
751 tatgcatcaa tttataatct tatatcctcg aaatggtgct acgcaccaca
801 tccggatggt gagcctagct cactttgagt attgagtaaa ttaatgaaaa
851 caaacaagta taattgtaac tacaatagct ttctcattat tatgtgatca
901 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa
951 tatgggcata catgagtgaa cctattggct caatcaactt gtctaatgtc
1001 atctagaaaa ctcctaatgg tcttcaaaat gagtcctatt ggtattattg
1051 aagctactag agacaacttt gggttgtcct tgactatccc ggctaacaat
1101 tccatccaat tggtggtgct ggtcttcaca gcttcaaaag agctcacatc
1151 aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc
1201 acataagagt atcaccggag tatatgaatt tgcatttgat catggaacca
1251 actgtgaccg aatagtaagt tgttgttatg catgttcctt ttttaatgtt
1301 gttcagtatc atagggcaaa ctgccaatcc ttcgcaggcc aagatatcac
1351 tgagatagac tttgtttgaa gattcaatgc ttacagttgt cttcttaaat
1401 ttcctctcta ttccagtgat cttgcatgag gtcccattga gagatatctt
1451 actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta
1501 ctggaaatag atccaaagtg cccagagata taccagagct agagaccaac
1551 acatccttta agggttcact tttcacatgc tctagcatat ccactccatc
1601 cctctctaca tacctaataa ctggcaaatc ttcatttgaa agtatcttag
1651 ttttacactt actgctaaga acaacagcat cttctttagt tggacactgt
1701 atgttgccta gtaactcctt gtcaaaagac cctaaatcat ttgcggtcct
1751 taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac
1801 tattatagtt tgacaatgat atggaaacta aagggctatc atacttacta
1851 gtaatgcctc ctagttcttt caacacatgc ccattttttt ggatataccc
1901 aactatttca aacttagtat ccatgcactt cataatggtg catgctcttg
1951 aagatgttgg ttcatattct attctcttcc aattgtagtg gtatgctggg
2001 caataggaaa agatgtggaa atcagtgaca caataatcaa agctcagact
2051 agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc
2101 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg
2151 gtataataca gaggcactga taagcacata acccgaacac tattaaatcg
2201 tatcttgtag acatcagtcg atgtcttgaa gcagaaatcc tgaggagtgt
2251 ttagtagggt caatttcatt ttagagatga agtcacaact attatttgtg
2301 cacctctcta tattggaaat gcttgaaaca aggtcttgac aggattctgc
2351 agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagcc
2401 catcctctac ttttctaccc ttcctctttg ctttatcgga aacattagtg
2451 ttaggtgcaa tggagtcttc tacaactaac aggccctcct ctgcttcatc
2501 cactactcta actgttgaca tatctacaga cacttcatct acaacaggtc
2551 ttctatgaca tagtccaacc attgaatata gtaccttttt tagcagccaa
2601 aatgcaggtt ttaggaaaaa taagatattc attatggtga tgagagtgaa
2651 tactatcact ataacaaaga acaagattat agagtacaat gaatatctat
2701 agatgtggga gcattgataa ttctttatcc tcattatcat gtccattctc
2751 tcatacttat cacaaatctc tccagggtga caagtaacat tttgacaacc
2801 acccttatca caaacttcaa tagtatcatc ataagttgga agtttgaccg
2851 attcacaaga agggatagaa aatgtttggt cactaacatt gacctcacat
2901 gcagaattga tataatacag cacaccatct gtgcaagagg gcttgattgc
2951 aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa
3001 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg
3051 agatttgagt atgaaatctt ttcagaattg gaattagtta tcaatagagg
3101 gcttgatgtg tattctgttt gctgtatgcc aaccagagat acattctgca
3151 gaatagcatc atcgcaactg agatagacgt gaccaccgaa tttagagaaa
3201 gaaggatgga gtggtagctt gtaatcgtag tttccagtgt agcatgtctc
3251 aaagtaattc acactagccc tgttgtaaca aatcagacca ttttcaatga
3301 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg
3351 caagggacct tgacaatctc agatggctcc ctctccctgt tcctcatcca
3401 agaatgggtg tcagggaaag gtattggtgc accccacgcc atattaaaga
3451 ttgtggtgta gatgaaatat gatttaaaat gcatcttcga agaagttata
3501 cccagacttt gtgt