Sequence of DPV Tomato leaf curl Vietnam virus
Tomato leaf curl Vietnam virus isolate Hai Duong 120 segment DNA A, complete sequence.
ACC No: GQ246940
Dated: 2009-07-07 | Length: 2747 | CRC: 190806521
ID GQ246940; SV 1; circular; genomic DNA; STD; VRL; 2747 BP.
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AC GQ246940;
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DT 07-JUL-2009 (Rel. 101, Created)
DT 07-JUL-2009 (Rel. 101, Last updated, Version 1)
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DE Tomato leaf curl Vietnam virus isolate Hai Duong 120 segment DNA A,
DE complete sequence.
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KW .
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OS Tomato leaf curl Vietnam virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2747
RA Thanh T.N., Vinh D.N., Mukherjee S.K.;
RT ;
RL Submitted (29-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, International Center for Genetic Engineering and
RL Biotechnology, Aruna Asaf Ali Marg, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2747
FT /organism="Tomato leaf curl Vietnam virus"
FT /segment="DNA A"
FT /host="tomato"
FT /isolate="Hai Duong 120"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Binh Giang"
FT /db_xref="taxon:208177"
FT gene 130. .480
FT /gene="AV2"
FT CDS 130. .480
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ACS94048.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ILVIRAKDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEVMGESAHV
FT PQAQDVQNVQKP"
FT gene 290. .1066
FT /gene="AV1"
FT CDS 290. .1066
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ACS94049.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYVNRAVAPTVLVTNKRRSW
FT VNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTH
FT RVGKRFCIKSVYVFGVRSGMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDN
FT EPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYD
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1063. .1467)
FT /gene="AC3"
FT CDS complement(1063. .1467)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="ACS94050.1"
FT /translation="MDSRTGELITATQAENGVFTWEITNPLYFKITEIQNRPFLSNNDI
FT VTVRIQFNYNLRKALGMHQCFLDFRIWTTSHLQTGRFLRVFRTQVLKFLNNLGVISLNN
FT VIRAVNYVLWEALTQTTFVNSSHVIKYNLY"
FT gene complement(1208. .1615)
FT /gene="AC2"
FT CDS complement(1208. .1615)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /note="RNAi suppressor"
FT /protein_id="ACS94051.1"
FT /translation="MQSSSASPNRCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSAL
FT NCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGNSKQTLPVEQRHSDGQDPIQLQ
FT PEESTGDAPMFSGLPDMDDLTPSDWSFLKSI"
FT gene complement(1515. .2603)
FT /gene="AC1"
FT CDS complement(1515. .2603)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="ACS94052.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQLKNLETPVNKLFIR
FT ICREFHEDGTPHLHVLMQFEGKFQCKNQRFFDLISPSRSAHFHPNIQAAKSSTDVKAYM
FT DKDGDVLDHGVFQIDGRSARGGCPVCNDAYAEAINSGSKASALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHLKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPL
FT YSSTYQSPAQDSEEENNQETED"
FT gene complement(2153. .2446)
FT /gene="AC4"
FT CDS complement(2153. .2446)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ACS94053.1"
FT /translation="MELLTCMFSCNSKGNSNVKTKDSSISYPQAGQHISIRTFRQLKAQ
FT QMSKPTWTKTETCLIMEFSKSMEDQLEEVAQSATTHMPRQSIQGPKHRPSIY"
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SQ Sequence 2747 BP; 729 A; 558 C; 609 G; 851 T; 0 other;
gq246940 Length: 2747 07-JUL-2009 Type: N Check: 1210 ..
1 accggatggc cgcgattttt tttagtggtc ccccccacta ttatttgtcg
51 gccaatacag acgctccctc aaagcttatt tgtgtaacgg tcccctataa
101 aacttggtcc ccaagtactc attccaaaca tgtgggatcc gcttttaaac
151 gagtttcccg aaaccgttca cggttttagg tgtatgctag ccattaaata
201 tttgcaatta gtagaaaata catactctcc tgatacatta gggtacgatt
251 taatacgtga tttaatttta gtcattcgtg ccaaggatta tgtcgaagcg
301 tcccgcagat atagtcattt ccactcccgc atccaaggtg cgtcgccggc
351 tgaacttcga cagcccgtat gtcaaccgtg ctgttgcccc cactgtcctc
401 gtcacaaaca aaaggaggtc atgggtgaat cggcccatgt accgcaagcc
451 caagatgtac agaatgtaca aaagccctga tgttccacga ggatgtgaag
501 gcccatgtaa agtccagtct tatgaacagc gtcatgatgt agcccatgta
551 gggaaggtaa tttgtgtgtc tgatgttaca cgtggtaatg ggttgactca
601 tcgtgttggt aagaggttct gtattaagtc agtttatgtt tttggggtaa
651 gatctgggat ggatgagaac attaagacga agaatcatac taatacggtc
701 atgttctttt tagtacgtga tagaagacct tttggaactc cccaagattt
751 tggtcaggtg tttaacatgt atgataacga gccaagtaca gccacggtga
801 agaacgataa cagagatcgt tttcaagttc ttcgtcggtt tcaggcaact
851 gttactggtg gtcagtatgc aagcaaagag caagcaatag ttaggaagtt
901 tatgaaggtg aacaaccatg tgacttataa tcatcaagag gctgcgaagt
951 atgataacca cacagagaat gctctgttat tgtatatggc atgtactcat
1001 gctagtaacc cagtgtatgc tacgttaaaa atcaggatct atttctatga
1051 ttctgttcag aattaataaa gattatattt tattacatga gaactgttta
1101 caaatgttgt ttgcgttaat gcttcccata atacataatt tactgctcta
1151 attacattat tcaaactaat tacacccaaa ttattgagaa atttcaaaac
1201 ttgtgtccta aatactctta agaaacgacc agtctgaagg tgtgaggtcg
1251 tccatatccg gaagtccaga aaacattggt gcatccccag tgctttcctc
1301 aggttgtagt tgaattggat cctgaccgtc actatgtcgt tgttcgacag
1351 gaagggtctg ttttgaattt ccgttatctt gaaatacagg ggatttgtta
1401 tctcccaggt aaaaacgcca ttctctgcct gagttgcagt gatgagttcc
1451 cctgtgcgtg aatccatggt tggcgcagtt aagtgcgctg aaataggaac
1501 aaccacaggg aagatcaatc ctccgtctcc tggttatttt cttcttcgct
1551 atcctgtgct ggactttgat aggtacttga gtacagcggt tcggtgatgc
1601 tgacgaagac tgcattcttt attgcccacg actttaatgc agtattcttt
1651 tcctcgtcta ggtattcttt atagcttgag ttgggccctg gattgcacag
1701 gaagatagct ggaatgccac ctttaatttg aaccggtttc ccgtactttg
1751 tgttgctttg ccagtccctt tgggccccca tgaattcttt taaatgcttt
1801 aggtagtgcg gatcaacgtc atcgatgacg ttgaaccagg catcattact
1851 gtacaccttt ggactcaaat caagatgacc acacagataa ttgtgtggac
1901 ccagtgatcg agcccacatc gtcttccccg tcctgctatc accctctatg
1951 actatactta ttggtcgtaa tggccgcgca gcggaactga cgacgttctc
2001 tgcagcccac tcttcgagtt cttctgggac tcgatcaaac gaagaagaag
2051 aaaaaggcga aacgtaaacc tccattggag gagtaaaaat cctatctaaa
2101 ttactattta aattatggaa ttgtaaaaca aaatctttgg gagctttctc
2151 ccttaatata ttgagggccg atgctttgga ccctgaattg attgcctcgg
2201 catatgcgtc gttgcagact gggcaacctc ctctagctga tcttccatcg
2251 atttggaaaa ctccatgatc aagcacgtct ccgtctttgt ccatgtaggc
2301 tttgacatct gttgagcttt tagctgcctg aatgttcgga tggaaatgtg
2351 ctgacctgct tggggatatg agatcgaaga atctttggtt tttacattgg
2401 aatttccctt cgaattgcat gagaacatgc aggtgaggag ttccatcttc
2451 gtggaattct ctacagatgc ggataaatag tttatttact ggggtttcta
2501 ggtttttaag ttgggaaagt gcttcttctt tagtgagaga gcagtgtgga
2551 tatgtgagga aataattttt ggcatttatt ctgaatttat taggaggagc
2601 cattgactgg tcaatcggtg tctcttaaac ttggctatgc aattggtgtc
2651 tggtgtctta tttatatgtg gacaccaaat ggcattatcg taattcccaa
2701 aagaaattca aaatttaaat tggtaaagcg gccatccgta taatatt