Sequence of DPV Tomato leaf curl Vietnam virus
Tomato leaf curl Vietnam virus isolate Haiphong 23 segment DNA A, complete sequence.
ACC No: GQ246941
Dated: 2009-07-07 | Length: 2744 | CRC: -1738305888
ID GQ246941; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
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AC GQ246941;
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DT 07-JUL-2009 (Rel. 101, Created)
DT 07-JUL-2009 (Rel. 101, Last updated, Version 1)
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DE Tomato leaf curl Vietnam virus isolate Haiphong 23 segment DNA A, complete
DE sequence.
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KW .
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OS Tomato leaf curl Vietnam virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2744
RA Thanh T.N., Vinh D.N., Mukherjee S.K.;
RT ;
RL Submitted (29-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, International Center for Genetic Engineering and
RL Biotechnology, Aruna Asaf Ali Marg, New Delhi, Delhi 110067, India
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FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /organism="Tomato leaf curl Vietnam virus"
FT /segment="DNA A"
FT /host="tomato"
FT /isolate="Haiphong 23"
FT /mol_type="genomic DNA"
FT /country="Viet Nam:Dongthai"
FT /db_xref="taxon:208177"
FT gene 125. .475
FT /gene="AV2"
FT CDS 125. .475
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="ACS94054.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL
FT ILVIRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEVMGQSAHV
FT PQAQDVQNVQKP"
FT gene 285. .1058
FT /gene="AV1"
FT CDS 285. .1058
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="ACS94055.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYANRAVAPTVLVTNKRRSW
FT VNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDIAHVGKVICVSDVTRGNGLTH
FT RVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDNE
FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1055. .1459)
FT /gene="AC3"
FT CDS complement(1055. .1459)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="ACS94056.1"
FT /translation="MDSRTGEPITATQAENGVFTWEITNPLYFKITELQNRPFLSNNDI
FT VTVRIQFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLNNLGVISLNN
FT VIRAVNYVLWDALTQTTFVNSSHVIKFNLY"
FT gene complement(1200. .1607)
FT /gene="AC2"
FT CDS complement(1200. .1607)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /note="RNAi suppressor"
FT /protein_id="ACS94057.1"
FT /translation="MQSSSASPSHSTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSAI
FT NCANHGFTHRGTHHCNSGREWRFYLGDNKSPVFQDNGTTKQTLPVEQRHSDGQDPIQLQ
FT PEESTGDAPMFSGLPDMDELTPSDWSFLKSI"
FT gene complement(1507. .2595)
FT /gene="AC1"
FT CDS complement(1507. .2595)
FT /codon_start=1
FT /gene="AC1"
FT /product="rep protein"
FT /protein_id="ACS94058.1"
FT /translation="MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIR
FT ICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYM
FT DKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSSAARPLRPISLVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNNALKSWAIKNAVFVSITEPL
FT YSSTYQSPAQDSQEENNQETED"
FT gene complement(2145. .2438)
FT /gene="AC4"
FT CDS complement(2145. .2438)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ACS94059.1"
FT /translation="MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQ
FT QMSKPTWTKTETCLIMEFSRSMEDRLEEVASLPTTHMPRQSIQGPKLRPSIY"
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SQ Sequence 2744 BP; 740 A; 567 C; 610 G; 827 T; 0 other;
gq246941 Length: 2744 07-JUL-2009 Type: N Check: 9365 ..
1 accggatggc cgcgattttt ttaccgtgga ccccgccact aaattttgtc
51 ggccattaga aacgctccct caaattatgc aacggcctcc tataaaactt
101 ggtccccaag tactcattcc aaacatgtgg gatccgcttt taaacgagtt
151 tcccgaaacc gttcacggtt ttaggtgtat gctagcgatt aaatatttgc
201 aattagtaga aaatacatac tctcccgata cattagggta cgacttaata
251 cgtgatttaa tcttagtcat tcgtgccagg gattatgtcg aagcgtcccg
301 cagatatagt catttccact cccgcatcca aggtgcgtcg ccggctgaac
351 ttcgacagcc cgtatgccaa ccgtgctgtt gcccccactg tcctcgtcac
401 aaacaaaagg aggtcatggg tcaatcggcc catgtaccgc aagcccaaga
451 tgtacagaat gtacaaaagc cctgatgttc cacgaggatg tgaaggccca
501 tgtaaagtcc agtcttatga acagcgtcat gatatagccc atgtagggaa
551 ggtaatttgt gtgtctgatg ttacacgtgg taacgggttg actcatcgtg
601 ttggtaagag gttctgtatt aagtcagttt atgttttggg taagatctgg
651 atggatgaga atattaagac gaagaatcat actaatacgg tcatgttctt
701 tttagtacgt gatagaagac cttatggaac tccccaagat tttggtcagg
751 tgtttaacat gtatgataac gagccaagta cagccacggt gaagaacgat
801 aacagagatc gttttcaagt tcttcgtcga tttcaggcaa ctgttactgg
851 tggtcagtat gcaagcaagg agcaagcaat agtcaggaaa ttcatgaagg
901 tgaacaacca tgtgacgtat aatcatcaag aggctgctaa gtatgataac
951 cacacagaga atgctttgtt attgtatatg gcatgtactc atgctagtaa
1001 cccagtgtat gctacgttaa aaatcaggat ctatttctat gattctgttc
1051 agaattaata aagattaaat tttattacat gagaactgtt tacaaatgtt
1101 gtttgcgtta atgcgtccca taatacataa ttgactgctc taattacatt
1151 attcaaacta attacaccca aattattgag aaacttcaaa acttgtgtcc
1201 taaatactct taagaaacga ccagtctgaa ggtgtgagtt cgtccatatc
1251 cggaagtcca gaaaacattg gtgcatcccc agtgctttcc tcaggttgta
1301 gttgaattgg atcctgaccg tcactatgtc gttgttcgac aggaagggtc
1351 tgttttgtag ttccgttatc ttgaaataca ggggatttgt tatctcccag
1401 gtaaaaacgc cattctctgc ctgagttgca gtgatgggtt cccctgtgcg
1451 tgaatccatg gttggcgcag ttaattgcgc tgaaataaga acaaccacag
1501 ggaaggtcaa tcctccgtct cctggttatt ttcttcttgg ctatcctgtg
1551 ctggactttg ataggtactt gagtagagtg gctcggtgat gctgacgaag
1601 actgcattct ttattgccca cgactttaat gcattattct tttcctcgtc
1651 taggtattct ttatagcttg agttgggccc tggattgcac aggaagatag
1701 ctggaatgcc acctttaatt tgaaccggtt ttccgtactt tgtgttgctt
1751 tgccagtccc tttgggcccc cataaattct ttgaaatgct ttaggtagtg
1801 cggatcaacg tcatcaatta cgttatacca ggcatcatta ctgtacacct
1851 ttggactcaa atcaagatga ccacagagat aattgtgtgg acccaatgat
1901 cgagcccaca tcgtcttccc cgtcctgcta tcaccctcta tgactaaact
1951 tattggtcgt aatggccgcg cagcggaact gacgacgttc tctgcagccc
2001 actcttcgag ttcctctggg actcgatcaa acgaagaaga agaaaaagga
2051 gaaacgtaaa cctccattgg aggagtaaaa atcctatcta aattactatt
2101 taaattatga aactgtaaaa caaaatcttt gggagctttc tcccttaata
2151 tattgagggc cgtagctttg gaccctgaat tgattgcctc ggcatatgcg
2201 tcgttggcag actggcaacc tcctctagcc gatcttccat cgatctggaa
2251 aactccatga tcaagcacgt ctccgtcttt gtccatgtag gctttgacat
2301 ctgttgagct tttagcgctc tgaatgttcg gatggaaatg tgctgacctg
2351 gttggggata cgagatcgaa gaatctgttg ttttggcatt tgaattttcc
2401 ttcgaactgg atgaggacat gcaggtgagg agacccatct tcgtgtagtt
2451 ccctgcagat tcgaatgaat aatttattgg ttggtgtcgt tagggctaaa
2501 aattgggaaa gtgcctcttc tttgcttaat gagcaatgtg ggtatgtgag
2551 gaaataattt ttggcattta ttagaaattt tttgggcgga ggcatgttga
2601 cttggtcaat cgggtcctct caaacttagc tatgcaatcg gggaatgggt
2651 ccttatttat atgtgaggac ctaaatggca taatcgtaaa taatcatgtg
2701 aatttcaaaa ttcaaattcc aaaagcggtc atccgtataa tatt