Sequence of DPV Carnation Italian ringspot virus
Carnation Italian ringspot virus isolate K483 replication-associated protein 2, replication-associated protein 1, coat protein, movement protein, and silencing suppressor genes, complete cds.
ACC No: GQ259477
Dated: 2009-10-14 | Length: 4612 | CRC: 217902601
ID GQ259477; SV 1; linear; genomic RNA; STD; VRL; 4612 BP.
XX
AC GQ259477;
XX
DT 14-OCT-2009 (Rel. 102, Created)
DT 14-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE Carnation Italian ringspot virus isolate K483 replication-associated
DE protein 2, replication-associated protein 1, coat protein, movement
DE protein, and silencing suppressor genes, complete cds.
XX
KW .
XX
OS Carnation Italian ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Tombusvirus.
XX
RN [1]
RP 1-4612
RX PUBMED; 19768632.
RA Koenig R., Lesemann D.E., Pfeilstetter E.;
RT "New isolates of carnation Italian ringspot virus differ from the original
RT one by having replication-associated proteins with a typical
RT tombusvirus-like N-terminus and by inducing peroxisome- rather than
RT mitochondrion-derived multivesicular bodies";
RL Arch. Virol. 154(10):1695-1698(2009).
XX
RN [2]
RP 1-4612
RA Koenig R.;
RT ;
RL Submitted (11-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Epidemiologie und Pathogendiagnostik, Julius Kuehn Institut,
RL Bundesforschungsinstitut fuer Kulturpflanzen, Messeweg 11, Braunschweig
RL D38104, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .4612
FT /organism="Carnation Italian ringspot virus"
FT /isolate="K483"
FT /mol_type="genomic RNA"
FT /isolation_source="surface water sample"
FT /db_xref="taxon:39443"
FT CDS 142. .2598
FT /codon_start=1
FT /transl_except=(pos:1030. .1032,aa:OTHER)
FT /product="replication-associated protein 2"
FT /note="P1-RT; readthrough of stop codon"
FT /protein_id="ACX53276.1"
FT /translation="METIRRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATKV
FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRAGPPNAKDRNIF
FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLARTPQPTKGAFGRLSPFRKAV
FT CEKVGVAHRLGYDGFLSYYNGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK
FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK
FT WDRFDKPVAIGLDASRFDQHCSVEALQFEHSFYRAMYPGNKLLGKLLDWQLHNKGKGYV
FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLILER
FT RNLKQVQKTLPEYFLNLGYTMKVEPPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK
FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVEKFYSRFTLYDVPRKHQRIDTVTN
FT VHKWRGSGGSYVVTPESRASFWAAFGLTGDEQLALEDRLDRWEMDLFGEEGVDAHEPSI
FT LDSAVA"
FT CDS 142. .1032
FT /codon_start=1
FT /product="replication-associated protein 1"
FT /note="P1"
FT /protein_id="ACX53275.1"
FT /translation="METIRRMIWPKKEIFVGEFAIGVNRTAPVDIFQLVCRVVLRYMRT
FT GKIECDSDSMTKFVVELLKTDCAAKWEWFMKRRQRGDYVVPLSIAAIPIIPLLSYATKV
FT RAVSVKAFGNELSFNVRVPRPSVPKKGLLLRLAAGLALAPICALAVYATLPREKLSVFK
FT LRTEARAHMEDEREATDCLVVEPARELKGKDGEDLLTGSRLTKVIASTGRPRRRPYAAK
FT IAQVARAKVGYLKNSPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE
FT ESAALWGSQESLGVK"
FT CDS 2610. .3770
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACX53277.1"
FT /translation="MTMVLRNPGTMVPQGGNKMSKMAKNAFQQGLQAGAAYLMSNPKGA
FT LKKGKDAWNYMTAGGVPSGIVHSGGMKGAIMAPVAVTRQLRGSKPKFSGRTSGSVTVSH
FT RELITQVNNSTQFVVNGGVTGNLRQVNPLNGTLFSWLPSIAANFDQYTFNSVTLHYVPL
FT CATTETGRVAMYFDKDSEDLEPADRVELANYATLKETAPWAEAMLRIPTDRIKRYNDDS
FT SVNDRKLIDLGQIGIATYGGSGTNPVGDVFISYSVTLHFPQPTAAGVQTRRLDLTSVLD
FT TNVGPSYTITSSTATVYTVAFRTVGTFMLFGAVRSTGSPVIGLSSANIAINSNTTLNTA
FT GTAFSYMTNVTVSALPASITFTVVGVITSSTSHAVRASRTDNADLI"
FT CDS 3805. .4374
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACX53278.1"
FT /translation="MDTEYEQVNKPWNELYKETKLGNKLMVNVGMEDQEVPLLPSNFLT
FT KVRVGLSGGYITMRRIRIKIIPLVSRKAGVSGKLYLRDISDTTGRKLHCTESLDLGREI
FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVRWQFGLSKNCYSLPQSKW
FT KVMYQEDALKALKPSKKKASKTDSSV"
FT CDS 3837. .4355
FT /codon_start=1
FT /product="silencing suppressor"
FT /protein_id="ACX53279.1"
FT /translation="MERAIQGNEAREQANGERWDGGSGSTTSPFKLPDESPSWTEWRLY
FT NDETNSNQDYPLGFKESWGFGKVVFKRYLRYDRTETSLHRVLGSWTGDSVNYAASRFFG
FT VNQIGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEVESNVSRGCPEG
FT TEAFKEESE"
XX
SQ Sequence 4612 BP; 1236 A; 942 C; 1253 G; 1181 T; 0 other;
gq259477 Length: 4612 14-OCT-2009 Type: N Check: 7791 ..
1 agttcgttta tctggtgact tgcgctaact gttgctttgc gtagggaatt
51 tctctccacg actactatct ttagttttgg ggtttgaagg ttgggtctac
101 ctttcggggg gataaattgt aacttccaac aaacaagcga catggagacc
151 atcaggagaa tgatctggcc taagaaggag attttcgtag gagaattcgc
201 gatcggagtt aataggacgg caccggtgga catcttccag ttggtgtgtc
251 gtgtggttct aagatacatg aggacaggga aaatagagtg tgattccgac
301 agtatgacta agtttgtagt tgaattacta aaaactgatt gtgctgccaa
351 atgggagtgg tttatgaaga gacggcagag gggtgactat gttgtccctc
401 tatctatagc cgccatccca atcataccgc tattgagtta tgccactaag
451 gtacgcgcag tctcagtcaa ggcttttggc aatgaactct cgttcaatgt
501 tagggtgcct agaccatctg taccaaagaa gggcttactc cttagactgg
551 cggcaggcct agcgttagca cctatatgcg cgctggcagt gtacgctacc
601 ctccctaggg aaaaactgtc tgtatttaag ctaagaaccg aggcacgcgc
651 acacatggaa gatgagaggg aagcgactga ttgtttggtg gttgagccgg
701 cacgggaact taagggtaag gatggtgagg atctcctcac tggtagtaga
751 ttgactaagg tgattgcgtc cacggggcgc cctcgcagac ggccttatgc
801 agctaaaatt gcacaggtcg cgagagctaa ggtgggttac cttaagaata
851 gtcctgaaaa cagacttatc taccagcgag tgatgattga gatcatggac
901 aaggactgcg tcaggtatgt tgacagggat gtcatattgc ctttggctat
951 tggatgctgt tttgtctatc cggacggagt ggaggagtcg gcggcactat
1001 ggggttctca ggaatccctt ggtgtcaaat agggaggcct agtacgtcta
1051 cctggggttg taacacagat caatcgagat atcccatctg atgtgttact
1101 tcctcaggag gtgctagagg ttcgtgcagg acctcccaat gctaaggacc
1151 gtaatatatt tatggttgca ggttgcccat cacaggcacg gttcttagta
1201 cataatcact gcctgaaaaa ccttaaaagg ggtcttgtgg agagagtctt
1251 ctgcgtagag agaaacggaa agctcgctcg cactccacaa cctaccaaag
1301 gagcctttgg acgtctttcc ccgttcagga aagcagtttg tgagaaggtt
1351 ggagttgccc accgacttgg gtatgatggg ttcctatcat actacaacgg
1401 tgcgaagctc cgtacttaca cacgagctgt ggagagtctg catatcactc
1451 ctgtctcgga gagggatagt catctgacta ccttcgtcaa ggcggagaag
1501 atatcgacgt caaagggtga cccagcacct agggtgattc agcctcgaaa
1551 ccctaggtac aatgtcgaac ttggaagata tctacggcat atggaatcca
1601 agctgatgaa agctgttgat ggcgtgttcg gagaaacgac gtgcatcaag
1651 ggatatacag ccgacgaggt gggtgcaatt tttcgagaga agtgggatag
1701 gtttgataaa cccgtcgcca ttggcctcga tgcatccagg tttgatcaac
1751 actgttccgt tgaagcattg cagtttgagc atagtttcta cagggccatg
1801 taccctggca acaagctttt gggcaagttg ttggactggc aactccataa
1851 caaagggaaa ggttatgttc ctgatggaac cataacatac cgcaaggagg
1901 ggtgccgcat gagtggggat ataaacactt cgttgggaaa ctatctattg
1951 atgtgcgcta tggtacacgg gtacatgcgc catttgggga ttaatgagtt
2001 tagtctggca aactgtgggg acgactgtgt tcttatacta gaacgtagga
2051 atcttaagca ggtgcagaaa actctaccag agtatttcct taatctagga
2101 tataccatga aggtggagcc gcctgtattt caattggaag aggttgaatt
2151 ttgccaggca caccccgtac agtttcaagg tggttggaag atggtccgca
2201 atgtccgcac cgcaatgagc aaagatgtgc attgtgtcaa taatatacgc
2251 gatctggcaa cgaggagagc atggagcaac gcccaacacc atggtggatt
2301 ggcacttagt gctggtatac ctgtggttga gaagttttac tccagattta
2351 cattgtatga tgtacctcgg aaacaccaac gtattgacac tgtcactaat
2401 gttcataagt ggcgtggatc tggtggaagt tatgttgtga ctcctgaatc
2451 cagggctagc ttttgggctg cctttggttt gacgggggat gagcaactgg
2501 ctttggagga tcgtctggat agatgggaga tggatctatt tggagaggag
2551 ggtgttgacg ctcacgagcc cagcatcctt gactccgccg tagcttgacc
2601 aagcaagaca tgacaatggt actgagaaat ccaggcacaa tggtgcctca
2651 aggcggcaat aagatgagta agatggcgaa gaatgcattt caacaaggat
2701 tacaagcagg ggctgcttat ctgatgagca accccaaggg ggcattaaag
2751 aaagggaaag acgcatggaa ttacatgaca gcagggggtg tgccaagtgg
2801 tatagtgcac tcagggggaa tgaaaggcgc gataatggcg cccgtggcag
2851 ttaccagaca gttaaggggg agtaaaccta aattctccgg aagaacatct
2901 ggttccgtga cagtaagtca tagagagcta attacgcaag tgaacaactc
2951 aacgcagttt gtggttaatg gtggtgttac aggcaatctt aggcaagtta
3001 atcccttgaa tgggaccttg ttttcatggt tacctagcat tgccgctaac
3051 tttgatcagt acacatttaa tagtgttacg ttacattacg tacctttatg
3101 tgctacgacc gaaactgggc gagttgcaat gtattttgac aaagattcgg
3151 aggaccttga gcctgcggac agagtagagc ttgctaacta tgctacattg
3201 aaggaaactg caccatgggc cgaggctatg ttacgtatac ctactgatcg
3251 tatcaaacgg tataatgatg acagcagcgt aaatgatcgc aaattgattg
3301 acctgggaca aataggtata gcaacatatg gtggttcggg cacaaaccct
3351 gttggggatg tgttcatatc ttacagtgtt actttacact tcccacaacc
3401 tactgcagcc ggtgtgcaga cacggcgtct tgatctcaca agtgttttag
3451 acacaaatgt cggacctagt tacaccataa cgtccagtac agctacggta
3501 tacacagttg cttttcgcac tgttggcacc ttcatgctgt ttggtgccgt
3551 gaggtcaact gggtcacccg ttatcggact gtctagtgca aatattgcta
3601 ttaatagcaa caccacattg aacacagccg gtactgcttt ctcctacatg
3651 acgaatgtca cggtgtcggc tctgccggca tccattacat tcactgtagt
3701 tggagtgatt acttcgtcaa cttcgcatgc cgtgagagca tcccgtactg
3751 ataacgcaga cctgatctag taccattgag gggcctcttg aacaagacca
3801 gttcatggat actgaatacg aacaagtcaa taaaccatgg aacgagctat
3851 acaaggaaac gaagctaggg aacaagctaa tggtgaacgt tgggatggag
3901 gatcaggaag taccacttct cccttcaaac ttcctgacga aagtccgagt
3951 tggactgagt ggcggctata taacgatgag acgaattcga atcaagatta
4001 tccccttggt ttcaaggaaa gctggggttt cgggaaagtt gtatttaaga
4051 gatatctcag atacgacagg acggaaactt cattgcacag agtccttgga
4101 tcttggacgg gagattcggt taactatgca gcatctcgat ttttcggtgt
4151 caaccagatc ggatgtacct atagtattcg gtttcgagga gttagtgtca
4201 ccatttctgg agggtcgaga actcttcagc atctctgtga gatggcaatt
4251 cggtctaagc aagaattgtt acagcttacc ccagtcgaag tggaaagtaa
4301 tgtatcaaga ggatgccctg aaggcactga agccttcaaa gaagaaagcg
4351 agtaagacag actcttcagt ctgagtttgc ggaaatgagt gtaaatctgg
4401 catagcatac aggttactct tgttgggttc tagatgttat gatgacgagc
4451 tggtcgggct ccgcactagg tttggtcgcc taggggatgg agatatggaa
4501 agggtctcgt gtgctgttag tcggtcggaa gacgcgcttg caacatgggc
4551 ctataaccgg ataagtcata gcaatactag ccaacatgaa ttggttagat
4601 tcaagaagcc ca