Sequence of DPV Unnamed sweet potato begomovirus
Sweet potato begomovirus strain SPBV-D-DNA-[5], complete genome.
ACC No: GQ268227
Dated: 2010-11-19 | Length: 1368 | CRC: -769202801
ID GQ268227; SV 1; circular; genomic DNA; STD; VRL; 1368 BP.
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AC GQ268227;
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DT 19-NOV-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE Sweet potato begomovirus strain SPBV-D-DNA-[5], complete genome.
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KW .
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OS Sweet potato begomovirus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-1368
RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA Faria J.C., Ribeiro S.G.;
RT "Detection, diversity analysis and cloning of Brazilian sweet potato
RT geminiviruses using rolling circle amplification";
RL Unpublished.
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RN [2]
RP 1-1368
RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA Faria J.C., Ribeiro S.G.;
RT ;
RL Submitted (13-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao
RL Biologica, Brasilia, DF 70770-900, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .1368
FT /organism="Sweet potato begomovirus"
FT /host="sweet potato"
FT /strain="SPBV-D-DNA-[5]"
FT /isolate="CNPH 1043"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /clone="1043/4-03"
FT /note="defective genome"
FT /db_xref="taxon:450633"
FT gene 72. .348
FT /gene="V2"
FT misc_feature 72. .348
FT /gene="V2"
FT /note="nonfunctional V2 due to mutation"
FT gene complement(349. .1198)
FT /gene="C1"
FT misc_feature complement(349. .1198)
FT /gene="C1"
FT /note="nonfunctional Rep due to mutation;
FT replication-associated protein"
FT gene complement(784. .1047)
FT /gene="C4"
FT CDS complement(784. .1047)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ACZ65972.1"
FT /translation="MKMGNLISTCYCSSKGTTNARISDSSTLYPHQGRLTFTPTSRELN
FT PAPMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL"
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SQ Sequence 1368 BP; 355 A; 282 C; 340 G; 391 T; 0 other;
gq268227 Length: 1368 19-NOV-2010 Type: N Check: 433 ..
1 accggtgccc gccgcgccct tttaaagtgg gccccacaat gggaccacgc
51 gtctttgccg tactgtcttt aatgattact ttgctttata aggaccaatc
101 aggtttccgt gcttgggcgc caagaatgga gcatttgtgg gaccctttgc
151 agaacccact cccggatact ttatacggtt ttaggtgtat gctatccgta
201 aaatacttgc agagtatttt gaagaaatac gagccaggaa ccttagggtt
251 cgagctctgt tcggagttaa tccgtatatt cagggtcagg cagtatgaca
301 gggcgaattc tcgtttcgcg gagatttcat ccatatgggg ggagaccgtg
351 gattgccagt ccttctgggc ccccatgaat tccttaaagt gctttaggta
401 ttgggggttg acgtcatcaa tgacgttata ccaagcactg ttgctgtata
451 ctttagggct tagatctaaa tgcccacaca aataattatg aggccccaaa
501 gacctggccc atactgtttt gcctattctg cttgggcctt caataacaat
551 ggatatgggt ctatccggcc gcgcagcgga atccatgaca ttttcagcgg
601 cccagtcgct gataatgtca ggaacggcat tgaaagaaga agatgaaaaa
651 ggagaagaat atacagaagg aggaggagaa aaaatcctat ctaaattact
701 aactaaattg tgaaattgaa acaaatattt ttcaggaagt ttctccttaa
751 ttatttgcaa cgcagcttct ttagaacctg cgtttagagc ctctgcggct
801 gcgtcattag cagtctgctg gcctcctcta gcagatctgc cgtcgacctg
851 gaattcaccc caggtgatgg tatccccgtc cttgtcaacg taggacttga
901 catcggagct ggatttagct ctctggatgt tggggtgaaa gtgagacgac
951 cttgatgggg atacaaggtc gaagaatcgc tgattcgtgc attggtagtt
1001 cccttcgaac tgcaatagca cgtggagatg aggttcccca ttttcatgca
1051 gctctctgca tatttttatg aattttttgt tggtgggggt gttgagatta
1101 agaagctgct cgagagcttc ttctttggtt agagagcact ggggatatgt
1151 aaggaaatag tttttggctt ttatattaaa acggcctgct ctaggcatgg
1201 tgaaaaaagc aaatggtgga acacaaactt gctgaatgaa tcggtggaac
1251 ggtggacaat ttatatgtgt ccaccaaatg gcattttggt aatttagaag
1301 atccttttag ctttaattca aattccgaca gctctaggcc cacaaaaggc
1351 gggcaccgta ttaatatt