Sequence of DPV Unnamed sweet potato begomovirus
Sweet potato begomovirus strain SPBV-D-DNA-[7], complete genome.
ACC No: GQ268229
Dated: 2010-11-19 | Length: 1335 | CRC: -1678062837
ID GQ268229; SV 1; circular; genomic DNA; STD; VRL; 1335 BP.
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AC GQ268229;
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DT 19-NOV-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE Sweet potato begomovirus strain SPBV-D-DNA-[7], complete genome.
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KW .
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OS Sweet potato begomovirus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-1335
RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA Faria J.C., Ribeiro S.G.;
RT "Detection, diversity analysis and cloning of Brazilian sweet potato
RT geminiviruses using rolling circle amplification";
RL Unpublished.
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RN [2]
RP 1-1335
RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H.,
RA Faria J.C., Ribeiro S.G.;
RT ;
RL Submitted (13-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao
RL Biologica, Brasilia, DF 70770-900, Brazil
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FH Key Location/Qualifiers
FH
FT source 1. .1335
FT /organism="Sweet potato begomovirus"
FT /host="sweet potato"
FT /strain="SPBV-D-DNA-[7]"
FT /isolate="CNPH 1168"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /clone="1168/3-11"
FT /note="defective genome"
FT /db_xref="taxon:450633"
FT gene 90. .386
FT /gene="V2"
FT misc_feature 90. .386
FT /gene="V2"
FT /note="nonfunctional V2 due to mutation"
FT gene 256. .390
FT /gene="V1"
FT misc_feature 256. .390
FT /gene="V1"
FT /note="nonfunctional CP due to mutation; coat protein"
FT gene complement(385. .1173)
FT /gene="C1"
FT misc_feature complement(385. .1173)
FT /gene="C1"
FT /note="nonfunctional Rep due to mutation;
FT replication-associated protein"
FT gene complement(759. .1022)
FT /gene="C4"
FT CDS complement(759. .1022)
FT /codon_start=1
FT /gene="C4"
FT /product="C4"
FT /protein_id="ACZ65974.1"
FT /translation="MKMGNLISMCFSSSRGITSARIKDSSTWSLQPGQHISTQTFRERN
FT PAPTSSPTSIRMETLWNGENSRSTADLLEEASRLLMTQQQRP"
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SQ Sequence 1335 BP; 351 A; 279 C; 316 G; 389 T; 0 other;
gq268229 Length: 1335 19-NOV-2010 Type: N Check: 1314 ..
1 accggtgccc gcgtttgttt tatggtgggc cccacacggc acctttaatc
51 attaaaaggc gcgtcaatta cgagactttg tcgccaagta tggatttgtg
101 ggatcctttg cagaacccat tacctgagac tttatacggt ctacggtgta
151 tgctttctgt gaaatacctg cagagtattt cggcgaaata cgagcctgga
201 accctagggt tcgagctttg ctccgattta atccgcattt tgcgggttcg
251 tcactatgac agggcgaatg cgcgttacgc ggagatttca tccgtatggg
301 gggacaccgg caagacggag actgaacttc gagaccgcta tcgtgcctta
351 cactgggaat gctgtcccaa ttgctgcccg aagtgacgtc atcaatgacg
401 ttataccaag cactgttgct atacactttg ggactcaagt ccaggtgtcc
451 acacaaataa ttatgaggac ctaacgaccg agcccatact gtttttccta
501 ttctacttgg gccttctata acaatactaa tgggcctatc cggccgcgca
551 gcggaatcca tgacattctc agcagcccag tcgctgataa tgtcaggtac
601 attattgaaa gaagaagaag aaaaagggga agaatacaca gaaggaggag
651 gagaaaaaat cctatctaaa tttgaaacta aattatgata ttgaaatata
701 tatttttcag gaagtttttc cctgattatt tgtaacgcag cttctttata
751 gcctgcattt agggcctctg ctgctgcgtc attagcagtc tgctggcctc
801 ctctagcaga tctgccgtcg acctggaatt ctccccattc caaagtgtct
851 ccatccttat cgacgtagga cttgacgtcg gagctggatt tcgctctctg
901 aatgtttggg tggaaatgtg ctgaccgggt tggagagacc aagtcgaaga
951 atctttgatt cgtgcactgg taattcccct cgaactggag aagcacatgg
1001 agatgaggtt gcccatcttc atgcagttct ctgcatatct taatatattt
1051 tttatttgta ggggtttgta gttgaagaag ctgctgaaga gtttcttctt
1101 tggatagaga acattgggga taagtgagaa aatagttttt tgctttgata
1151 ttaaaacgcc cggctcttgg cattttgact aagtcaaatg gtggacacaa
1201 aaactctata tgaattggtg gaacggtgga caatttatat gtgtccacca
1251 aatggcaaat tggtaattta ggtaacttta atttgaatgg taagatccta
1301 ttggtcctcc ataaagcggg caccgtatta atatt