Sequence of DPV Soybean chlorotic blotch virus
Soybean chlorotic blotch virus isolate Sb19 segment DNA-A, complete sequence.
ACC No: GQ472985
Dated: 2010-05-13 | Length: 2708 | CRC: 823489466
ID GQ472985; SV 1; circular; genomic DNA; STD; VRL; 2708 BP.
XX
AC GQ472985;
XX
DT 13-MAY-2010 (Rel. 104, Created)
DT 13-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE Soybean chlorotic blotch virus isolate Sb19 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Soybean chlorotic blotch virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2708
RX PUBMED; 20229118.
RA Alabi O.J., Kumar P.L., Mgbechi-Ezeri J.U., Naidu R.A.;
RT "Two new 'legumoviruses' (genus Begomovirus) naturally infecting soybean in
RT Nigeria";
RL Arch. Virol. 155(5):643-656(2010).
XX
RN [2]
RP 1-2708
RA Alabi O.J., Kumar P.L., Mgbechi-Ezeri J.U., Naidu R.A.;
RT ;
RL Submitted (11-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Washington State University, 24106 N. Bunn Rd., Prosser,
RL WA 99350, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2708
FT /organism="Soybean chlorotic blotch virus"
FT /segment="DNA-A"
FT /host="soybean"
FT /isolate="Sb19"
FT /mol_type="genomic DNA"
FT /country="Nigeria"
FT /collection_date="2007"
FT /db_xref="taxon:761702"
FT gene complement(239. .559)
FT /gene="AC4_5_2"
FT CDS complement(239. .559)
FT /codon_start=1
FT /gene="AC4_5_2"
FT /product="hypothetical protein"
FT /protein_id="ADG36420.1"
FT /translation="MCQSGPTSNIGTAENCTRVTNVMLGVIRLDLTRPFTAEGHIWTPP
FT HPVHHGLPIHGPILPGPLLVGPGDGSGHGTWTVEVQPPPNLRQRCRNYDIGVSLHDISF
FT RE"
FT gene 260. .1021
FT /gene="AV1"
FT CDS 260. .1021
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ADG36415.1"
FT /translation="MKRNADIVISTPLSKVRRRLNFDSPRAMPTAIPRTNKKRAWENRP
FT MYRKPMMYRMWRSPDVPFGCEGPCKVQSYDAKHDVSHTGTVLCCSDITRGSGLTHRVGK
FT RFTIKSILLMGKIWMDDNIKLKNHTNIVTFFLVRDRRPSDKPYSFGSVFNMFDNEPTTA
FT TVKQDNRDRSQVIRKFHATVTGGQYASKEQALVKKFFKINHKVVYNNQEGAEYKNHQEN
FT ALLLYMACSHASNPVYATIKARVYFYDSVTN"
FT gene complement(701. .955)
FT /gene="AC5"
FT CDS complement(701. .955)
FT /codon_start=1
FT /gene="AC5"
FT /product="hypothetical protein"
FT /protein_id="ADG36421.1"
FT /translation="MTTCHIEKQSILLVVLVLRTFLIVVDDLVINFKKFLHQCLLLRSI
FT LATSNCGMKLTNNLGSIAVILFNCRCRGFIVEHVEHTAK"
FT gene complement(1018. .1431)
FT /gene="AC3"
FT CDS complement(1018. .1431)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer"
FT /note="REn"
FT /protein_id="ADG36418.1"
FT /translation="MDLRTGESITAVQAGNGVYIWAVPNPLHFKVIEHHMNIPGLPYNI
FT IKLRVQFNHNLRRALGLHKCWITLTILTRLTRSTNPTGIFLRVFKTQVLRYLDSIHVIS
FT INGVIRAINHCLYDVLVGTEEVRTKYEIKFNLY"
FT gene complement(1163. .1579)
FT /gene="AC2"
FT CDS complement(1163. .1579)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /protein_id="ADG36417.1"
FT /translation="MRSSSASPSHSTAVPIKVRHRQAKKRQIRRRRVDLRCGCSYFVSI
FT NCANHGFTHRGIHHCSSSREWRLYLGGPKSSALQSDRASHEYSGVAIQHNQASSAVQPQ
FT PPESIRTPQVLDNLDDINAIDPLYQSDWDFLEGL"
FT gene complement(1479. .2567)
FT /gene="AC1"
FT CDS complement(1479. .2567)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /note="Rep"
FT /protein_id="ADG36416.1"
FT /translation="MPRSGAFRVNAKNIFLTYPRCSLSKDEALELLKGIPTPVNKKFIK
FT VARELHEDGQPHLHVLLQFEGKFSIKNPRLFDLVSRASAHVFHPNVQGAKSSSDVKSYI
FT DKDGDTVSWGEFQIDGRSSRGGKQSANDAYAAAINTGSPTKALQLLKEPCPKDYVLQFH
FT HLKGNLERIFMKEPTPWACPYDPRSFNNVPDVMLDWVSVNVKDPAARPNRPMSIVVEGD
FT SRTGKTMWARSLGVHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGHSSSYKSYLDEEKNSSLKQWALKNAIFVSIAFPL
FT YSSPDQGKTSPGEEEANPTPPC"
FT gene complement(2117. .2410)
FT /gene="AC4"
FT CDS complement(2117. .2410)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="ADG36419.1"
FT /translation="MGSHISMCCCNSKVNSPSKILDCSTLSRERLLMCSTQTYKELNPA
FT PTSSPTSTKTATPCHGESFRSMEDRVVEVSNLRTTLTPQQLTRAVRLRLSSY"
XX
SQ Sequence 2708 BP; 690 A; 631 C; 625 G; 762 T; 0 other;
gq472985 Length: 2708 13-MAY-2010 Type: N Check: 1869 ..
1 acctgagggc cgcgcttttg gtgcccacct ttcgaccaat cagaatgcgc
51 gctgatagct atcataagcc ttgggccgtc tataaagtag cccacctcct
101 tattgggcta caaacatgtt taacccattg gtcgaaactc tcccctgcac
151 cccccacggt ctcggtgtgt actcgctctc aagtttctga aattgtttga
201 ggaaacccac gtgctctcag cgacagaggt aaattcagtt attcacggaa
251 ggaaatatca tgaagcgaaa cgccgatatc gtaatttcta cacctttgtc
301 gaaggttcgg aggaggttga acttcgacag tccacgtgcc atgcccactg
351 ccatccccag gaccaacaag aagagggcct gggagaatcg gcccatgtat
401 cggaagccca tgatgtacag gatgtggagg agtccagatg tgcccttcgg
451 ctgtgaaggg ccttgtaagg tccagtcgta tgacgccaag catgacgtta
501 gtcacacggg tacagttctc tgctgttccg atattactcg tgggtccgga
551 ttgacacatc gtgtcggcaa aaggtttacc atcaagtcca ttcttttgat
601 gggcaagatt tggatggacg acaatatcaa attaaagaac cacactaata
651 tcgtcacctt ttttttagtg cgcgataggc gcccatctga caagccatat
701 tcatttggca gtgtgttcaa catgttcgac aatgaaccca cgacagcgac
751 agttaaacaa gataaccgcg atcgatccca agttattcgt aagtttcatg
801 ccacagttac tggtggccaa tatgcttcta aggagcaggc attggtgaag
851 aaatttttta aaattaatca caaggtcgtc tacaacaatc aggaaggtgc
901 ggagtacaag aaccaccagg agaatgcttt gcttctctat atggcatgta
951 gtcatgcttc taacccagtg tatgctacta ttaaggctcg tgtgtatttt
1001 tatgattcag tcacaaatta ataaagattg aattttattt catatttggt
1051 acgcacttct tcagtgccaa caagtacatc gtacaaacaa tgattaatgg
1101 ctcttataac tccattaatc gaaattacat gaattgaatc taaataacgc
1151 aacacttgag tcttaaagac cctcaagaaa atcccagtcg gattggtaga
1201 gcgggtcaat cgcgttaata tcgtcaaggt tatccagcac ttgtggagtc
1251 ctaatgctct ccggaggttg tggttgaact gcactcgaag cttgattatg
1301 ttgtatggca accccggaat attcatgtga tgctcgatca ctttgaagtg
1351 cagaggattt gggaccgccc agatatagac gccattcccg gcttgaactg
1401 cagtgatgga ttcccctgtg cgtaaatcca tggtttgcgc aattaattga
1451 gacgaaatag gaacagccac agcgtagatc aacacggcgg cgtcggattt
1501 gcctcttctt cgcctggcga tgtcttacct tgatcgggac tgctgtagag
1551 tgggaaggcg atgctgacga agatcgcatt ctttaatgcc cactgtttca
1601 gggatgaatt tttctcttca tccaaataac tcttataaga gctactgtgt
1651 cccgggttgc ataaaaagat ggtgggaatt ccccctttaa tttgaatcgg
1701 tttaccgtat ttcgtgttgc tctgccaatc atgctgggcc cccatgaatt
1751 ccttgaagtg ctttaggtag tgcggatcta cgtcatcgat gacgttgtac
1801 catgcattat tgctgtacac ctttggactc aggtctagat gaccacatag
1851 gtaattgtgt acccccaaag accgcgccca catcgtcttc cccgttctgg
1901 aatcaccttc aacgacgata ctcatgggtc tgttaggccg cgcagcggga
1951 tctttcacat taacagacac ccaatcaagc ataacgtccg ggacgttgtt
2001 aaatgaacgg ggatcataag gacaagccca tggtgttggc tccttcatga
2051 aaatcctttc taaattacct ttaaggtggt ggaactgtaa tacataatcc
2101 tttggacatg gttcctttaa taactggaga gccttagtcg gactgcccgt
2151 gttaattgct gcggcgtaag cgtcgttcgc agattgctta cctccacgac
2201 tcgatcttcc atcgatctga aactctcccc atgacacggt gtcgccgtct
2251 ttgtcgatgt aggacttgac gtcggagctg gatttagctc cttgtacgtt
2301 tgggtggaac acatgagcag acgctctcga gacaaggtcg aacagtcgag
2351 gatttttgat ggagaattta ccttcgaatt gcagcagcac atggagatgt
2401 ggctgcccat cttcgtgtag ctctctagct accttgatga acttcttgtt
2451 cacaggtgtt ggtataccct tgagtaattc cagagcttcg tcttttgata
2501 atgagcatct gggatatgtg aggaagatat tcttcgcatt cactctaaaa
2551 gctccgcttc taggcatgct tgcttccgta cagggacacc aattggggac
2601 tcgtcattta ttccttgtat tgggggcttt gggggcctat aaatacttct
2651 agtgtctatc acaatatgac atacgtgtca cacatctagc ggccctcagt
2701 ataatatt