Sequence of DPV Eclipta yellow vein virus
Eclipta yellow vein virus clone EcYVV-[PK,Fai,06], complete genome.
ACC No: GQ478343
Dated: 2011-08-01 | Length: 2740 | CRC: -564817373
ID GQ478343; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
XX
AC GQ478343;
XX
DT 01-AUG-2011 (Rel. 109, Created)
DT 01-AUG-2011 (Rel. 109, Last updated, Version 1)
XX
DE Eclipta yellow vein virus clone EcYVV-[PK,Fai,06], complete genome.
XX
KW .
XX
OS Eclipta yellow vein virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2740
RA Khatri S.M., Nawaz-ul-Rehman M.S., Fauquet C.M.;
RT "Eclipta yellow vein disease associated begomovirus";
RL Unpublished.
XX
RN [2]
RP 1-2740
RA Khatri S.M., Nawaz-ul-Rehman M.S., Fauquet C.M.;
RT ;
RL Submitted (28-JUL-2009) to the INSDC.
RL ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO
RL 63132, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Eclipta yellow vein virus"
FT /segment="DNA-A"
FT /host="Eclipta prostrata"
FT /lab_host="Nicotiana benthamiana"
FT /mol_type="genomic DNA"
FT /country="Pakistan"
FT /collected_by="Muhammad Shah Nawaz-ul-Rehman"
FT /collection_date="06-Nov-2006"
FT /clone="EcYVV-[PK,Fai,06]"
FT /db_xref="taxon:875324"
FT CDS 132. .479
FT /codon_start=1
FT /product="V2"
FT /note="pre-coat protein"
FT /protein_id="ADM32421.1"
FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL
FT ISILRSRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSHVGEQAHEP
FT EAQNVQDVQKP"
FT CDS 292. .1062
FT /codon_start=1
FT /product="V1"
FT /note="coat protein"
FT /protein_id="ADM32420.1"
FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRMWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYGAKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1065. .1469)
FT /codon_start=1
FT /product="C3"
FT /note="replication enhancer protein; REn"
FT /protein_id="ADM32424.1"
FT /translation="MDLRTGEPITAAQAWNGAYIWDVPNPLYFKILSHDNRPFTTNMDL
FT IKIRIQFNYNLRRALGVHKCFLTFQIWTTLHPPTGLFLKVFKTQVLKYLNNLGVISINS
FT IIRAVDHVLYNKIEQTMYVDMNSEIKFDLY"
FT CDS complement(1162. .1614)
FT /codon_start=1
FT /product="C2"
FT /note="transcriptional activator protein; TrAP"
FT /protein_id="ADM32423.1"
FT /translation="MRSSSPLRDHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CFNHGFTHRGTHHCSSSMEWRLYLGRSKSPIFQDPQPRQPAIHDQYGLNKDQNPIQLQP
FT SESSGSAQMFSDLPNLDDLTPSDWSFLKGIQDPSPQVSQQSGCNLN"
FT CDS complement(1511. .2596)
FT /codon_start=1
FT /product="C1"
FT /note="replication protein"
FT /protein_id="ADM32422.1"
FT /translation="MPRAFKLNAKNYFLTYPDCSLTKEEALSQIKNLNTPTSIKYIKIC
FT RELHQNGKPHLHMLIQFEGKYQCTNHRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVEK
FT DGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEAIRIIKELAPKDYVLQFHNL
FT NANLDRIFTPPMEVYVSPFSSSSFDQVPEELEEWAAENIVSAAARPLRPQSIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQS
FT NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFVTLEGPLYS
FT GSNQSTAQGSEEAQQEEESRS"
FT CDS complement(2143. .2445)
FT /codon_start=1
FT /product="C4"
FT /note="movement associated protein"
FT /protein_id="ADM32425.1"
FT /translation="MGNLIYTCSSSSRESTSARITDSSTWSPQPGQHISIRTFRELNQA
FT RTSSHTSRRTETPSTGESFRSMEDLQEGDNSQPMTLTPQHLTQAVSQRLLESLKN"
XX
SQ Sequence 2740 BP; 697 A; 572 C; 638 G; 833 T; 0 other;
gq478343 Length: 2740 01-AUG-2011 Type: N Check: 5409 ..
1 accggatggc cgcgcgattt ttttgtgggt ccctccacta actcttgtct
51 gccaatcata tgacgcgctg aaagcttaaa taattatccc gcctattata
101 agtacttcgt cgctaagtta tagtttgaaa aatgtgggat ccactgttaa
151 acgagttccc tgagactgtt cacgggtttc gttgcatgct tgcgattaaa
201 tatcttcaac aactgtctga agaatactca cctgatacgg taggttacga
251 tctaattcgc gatttaattt ctattttacg ttccaggaat tatgtcgaag
301 cgtcctgccg atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg
351 actgaacttc gacagcccct atgcaacccg tgcagttgtc cccactgtcc
401 gcgtcacaaa gtctcgcatg tgggcgaaca ggcccatgaa ccggaagccc
451 agaatgtaca ggatgtacag aagccctgat gttccaagag gctgtgaggg
501 tccgtgtaag gtccaatcct ttgagtccag acacgatgta gtccatatag
551 gtaaggtcat gtgtattagt gatgttactc gcggtactgg gctgacccat
601 agagttggga aacgtttctg tgttaaatca gtctatgtat tgggtaagat
651 ctggatggat gaaaacataa agtccaaaaa ccacactaac aatgtgatgt
701 tcttcttggt ccgtgatcga cggcctgtgg ataagcctca ggattttgga
751 gaggtcttca acatgtttga caacgagccc agcaccgcta ctgtcaagaa
801 tgttcatcga gatcgctacc aggtgttgag gaaatggtat gcaacagtta
851 cgggtggtca atatggagct aaggaacagg ccttggtcaa gaagtttgtc
901 cgagttaaca attatgttgt ttacaatcag caagaggcag ggaaatatga
951 gaatcattct gagaatgccc tgatgttgta tatggcatgt actcatgcct
1001 ctaatccagt ttacgccact cttaagatta ggatctactt ctacgattct
1051 gtaaccaatt gatattaata aagatcgaat tttatttctg aattcatgtc
1101 tacgtacata gtttgttcta ttttattgta caatacatga tctactgctc
1151 taataatcga attaattgag attacaccca gattgttgag atacttgagg
1201 acttgggtct tgaatacctt taagaaaaga ccagtcggag ggtgtaaggt
1251 cgtccagatt tggaaggtca gaaaacattt gtgcactccc agagctctcc
1301 gaaggttgta gttgaattgg attctgatct ttattaagtc catattggtc
1351 gtgaatggcc ggttgtcgtg gctgaggatc ttgaaatata ggggatttgg
1401 aacgtcccag atataggcgc cattccatgc ttgagctgca gtgatgggtt
1451 cccctgtgcg taaatccatg gttgaagcag ttaatagata aataataaga
1501 acacccgcat tcaagatcta ctctcctcct cctgttgcgc ctcttcgctt
1551 ccctgtgctg tactttgatt ggaacctgag tacagtggtc cctcaagggt
1601 gacgaagatc gcattcttca ctgcccagtt ctttagtgcg gtgttctttt
1651 cctcatctag gaattcttta taactgctgt tgggaccagg attgcagagg
1701 aagattgttg gtattccgcc tttaatttga actggcttcc cgtactttgt
1751 gttggattgc cagtcccttt gggcccccat gaattcttta aagtgcttga
1801 ggaagtgcgg atctacgtca tcaatgacgt tataccaagc gtcgttactg
1851 tacacctttg ggcttagatc taaatgccca cataaatagt tatgtgggcc
1901 taaagaccta gcccacattg tcttcccagt acgactgtca ccctcaatca
1951 ctatactttg aggtctcaag ggccgcgcag cggcactgac gatgttctcg
2001 gcagcccact cttcaagttc ttctggaact tgatcaaagg aagaggaaga
2051 aaaaggagag acataaacct ccattggagg tgtaaaaatc ctatctaaat
2101 tagcatttaa attatgaaat tgtagtacat aatcttttgg tgctaattct
2151 ttaatgattc taatagcctc tgacttactg cctgcgttaa gtgctgcggc
2201 gtaagcgtca ttggctgact gttgtccccc tcttgcagat cttccatcga
2251 tctgaaactc tccccagtcg agggtgtctc cgtccttctc gacgtatgac
2301 ttgacgtccg agcttgattt agctccctga atgttcggat ggaaatgtgc
2351 tgacctggtt ggggagacca agtcgaagaa tcggtgattc gtgcactggt
2401 actttccctc gaactggatg agcatgtgta gatgaggttt cccattttga
2451 tgaagctctc tgcagatctt gatatatttt attgaagttg gggtatttag
2501 gtttttgatt tgggaaagtg cttcctcttt tgttagagag cagtcgggat
2551 aagtgaggaa gtagtttttg gcgtttaatt taaaggcacg tggcattttg
2601 gcaatcggtg tacactctaa ttctctggta atcggtgtaa tggggtacaa
2651 tatataggtg tacaccaaat ggcattattg taatttggga aagtaattca
2701 aaatcctcac gctccaaaaa gcggccatcc gtctaatatt