Sequence of DPV Quaranfil virus
Quaranfil virus isolate EG T 377 polymerase PA (PA) gene, complete cds.
ACC No: GQ499303
Dated: 2009-11-09 | Length: 2403 | CRC: 254909819
ID GQ499303; SV 1; linear; viral cRNA; STD; VRL; 2403 BP.
XX
AC GQ499303;
XX
DT 09-NOV-2009 (Rel. 102, Created)
DT 09-NOV-2009 (Rel. 102, Last updated, Version 1)
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DE Quaranfil virus isolate EG T 377 polymerase PA (PA) gene, complete cds.
XX
KW .
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OS Quaranfil virus
OC Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
OC unclassified Orthomyxoviridae.
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RN [1]
RP 1-2403
RX DOI; 10.1128/JVI.00677-09.
RX PUBMED; 19726499.
RA Presti R.M., Zhao G., Beatty W.L., Mihindukulasuriya K.A., da Rosa A.P.,
RA Popov V.L., Tesh R.B., Virgin H.W., Wang D.;
RT "Quaranfil, Johnston Atoll, and Lake Chad viruses are novel members of the
RT family Orthomyxoviridae";
RL J. Virol. 83(22):11599-11606(2009).
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RN [2]
RP 1-2403
RA Presti R.M., Wang D., Virgin H.W.;
RT ;
RL Submitted (19-AUG-2009) to the INSDC.
RL Medicine, Washington University, 660 S. Euclid, St. Louis, MO 63110, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2403
FT /organism="Quaranfil virus"
FT /segment="2"
FT /host="Argas reflexus"
FT /isolate="EG T 377"
FT /mol_type="viral cRNA"
FT /country="Afghanistan"
FT /collection_date="Sep-1968"
FT /db_xref="taxon:688436"
FT gene 29. .2095
FT /gene="PA"
FT CDS 29. .2095
FT /codon_start=1
FT /gene="PA"
FT /product="polymerase PA"
FT /db_xref="GOA:D0UFC8"
FT /db_xref="InterPro:IPR001009"
FT /db_xref="UniProtKB/TrEMBL:D0UFC8"
FT /protein_id="ACY56279.1"
FT /translation="MAFEAYRLLIANPQLYEPDFVSQAGELSEHWARENWKRREESLRH
FT DKVCMLLMNTEPRERSHTQAEGEEEGSSSRSLATEEGEKRFSLEALEGLVDQGREVLLE
FT NLEMEEAQANSDSEGPNEADSGGEGEEFVFGVESESEMEVASEVTKLLEPDLIDSNFRY
FT TLLEGVTSGKFAQMEFTALWGINTNNKWDLVDRVNRKLIEVKVTTRPPTGVWEEVVAHA
FT EGTDPEHNGAYIIHDDLCGNFTPYKFGNISDLPGWPSAQDFPIRRHAFLASYGGVPSAG
FT GIEEGLPAWDDVFMERTRNWVAPLWKKGPISVRRDDCPRMEPFNITKFITLLEDPRLRN
FT TDKSAKWKGKILPVSWCRTIISSQEKDIDMVQEVIRDLGVIGLWEEINANPVKVERTVS
FT ALSELMRLFQEGFREKNPYISVKRKCKGWVITGHKQTPALTDTLLELGVGYKPYQMSNV
FT VEEDMRQCETDDIEKMKWVDWMSKLAATESEPLGSKVSRDDIFKEAESRHVLDEPAKKM
FT CSKVYDLYRSHKIGATCSKFMGFYSRMGGSYLRAIAGNSRQHSSLAIMPLYYKTYQEDG
FT TSTRHLTGLVIRGPHHVRESTDTINLLIVEKTCLSRREAQERLSGGALVNGVWWVRKNA
FT IRKADPTYLAFLHNSLFVPTNFLGELVTTPKHFLRQRQPRILGRNPVWQLWLL"
XX
SQ Sequence 2403 BP; 689 A; 516 C; 658 G; 540 T; 0 other;
gq499303 Length: 2403 09-NOV-2009 Type: N Check: 7412 ..
1 agcaatcaca attctctttt cttcttcaat ggcttttgag gcatacagat
51 tgttgatagc taacccccaa ctgtatgagc ctgacttcgt ttctcaggct
101 ggggagttgt ctgagcattg ggcgagagaa aactggaaga ggagggaaga
151 atctttgagg catgacaagg tatgcatgct attgatgaac acagaaccta
201 gggagcggag ccacacgcaa gccgagggtg aggaagaagg gagcagctcc
251 aggagcttgg ccactgagga gggagagaaa aggttttcat tggaggctct
301 ggaagggctg gtggaccaag gcagagaagt actgctggaa aatctcgaga
351 tggaggaggc acaagcgaac agtgactctg agggccccaa tgaggcagat
401 agcggtggag agggggaaga gtttgttttc ggtgtcgaaa gtgaatctga
451 gatggaagtc gcctccgaag tcactaaact tttggagcct gacttaatag
501 actctaattt ccggtacact ctgcttgagg gagtcaccag tggaaaattc
551 gcccagatgg aattcaccgc tctttggggc ataaacacta acaacaagtg
601 ggacttagtg gacagagtaa atcggaaact catcgaagtt aaagtgacta
651 ctaggccccc tactggtgtc tgggaggaag tggtggctca tgcagagggc
701 acagacccag aacataacgg ggcttacatc atccatgacg acctgtgcgg
751 caattttact ccatacaagt ttgggaacat cagtgacctg cccggctggc
801 ccagtgcaca agactttccc atcagacggc atgctttctt ggcctcttat
851 ggaggggtcc cctcggctgg gggaattgag gaggggctgc ctgcttggga
901 tgatgttttc atggaaagaa ctagaaattg ggttgcaccc ctttggaaaa
951 aaggccccat ttcagtccgg cgagatgact gcccaagaat ggagcccttc
1001 aacatcacca aattcatcac gctccttgaa gacccaaggc taagaaacac
1051 tgataagtca gcaaagtgga agggcaagat cttgcccgtc agttggtgca
1101 ggacaatcat ttctagtcaa gaaaaggata tagacatggt ccaagaagtc
1151 ataagagacc taggagtgat agggttgtgg gaagaaataa atgcaaatcc
1201 agtcaaagta gaaagaactg tctcagctct gtctgagtta atgcgactgt
1251 tccaagaggg atttagggaa aagaaccctt atatctctgt gaagagaaaa
1301 tgcaaaggct gggtcataac tgggcacaaa caaacccccg cactcactga
1351 cactctgttg gaactcggtg taggctacaa accttaccaa atgtcaaatg
1401 tagtagagga ggacatgagg cagtgtgaga cagatgacat agaaaaaatg
1451 aaatgggtag actggatgag taagctggct gccactgaat cagagccact
1501 gggcagtaag gtctctcgtg acgacatttt caaagaagca gagagtcggc
1551 atgtcctgga cgagccggcc aagaagatgt gtagtaaagt ttacgatcta
1601 tatcgcagtc acaagatcgg ggccacttgc tccaagttca tggggttcta
1651 ctcccgaatg ggagggtcct atctgcgggc tattgcagga aacagtaggc
1701 aacattcatc cctggcaatc atgcccttat actacaagac ttaccaggaa
1751 gacggtacga gcactcgcca cctaactggg ttagtgatac ggggcccaca
1801 ccacgtgcga gaatcgaccg acactatcaa cttgctgata gttgaaaaga
1851 cttgtcttag tagaagagaa gcccaggaaa gactttccgg gggagctctt
1901 gtaaatggtg tgtggtgggt gaggaaaaat gcaattcgaa aggcggaccc
1951 aacctatcta gccttcctac acaactctct gtttgtcccc accaatttcc
2001 taggtgaact ggtcaccaca cccaaacatt tcctacgcca aagacaaccc
2051 cgcatactgg gacgtaatcc tgtctggcag ctttggttgc tgtaaggagt
2101 tccacctgag gaggtagttg agactgttct aatgggaatt ctaggcaaat
2151 cccaagagga agggtaccat gacatgtata ggaaagtgta catgctcctc
2201 atggcaaaag gtagggggga catagcacaa gtgatggacc tcaaagctat
2251 ggcggaggag atgaatgaat gtctcctgga ttcggccttc gttatgtggt
2301 gccactgcga gctcctcgat tttatgaagt tcgtttcctc tagataccca
2351 ttcaactgtt gaacccaaga catgtgtttt agaaaaagag gattgtgatt
2401 gct