Sequence of DPV Potato virus Y

Potato virus Y isolate TT138E_111_104 coat protein gene, partial cds.

ACC No: GQ853666

Dated: 2009-11-25 | Length: 807 | CRC: -1734938312

                
ID   GQ853666; SV 1; linear; genomic RNA; STD; VRL; 807 BP.
XX
AC   GQ853666;
XX
DT   24-NOV-2009 (Rel. 102, Created)
DT   25-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE   Potato virus Y isolate TT138E_111_104 coat protein gene, partial cds.
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KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-807
RX   PUBMED; 19862472.
RA   Visser J.C., Bellstedt D.U.;
RT   "An assessment of molecular variability and recombination patterns in South
RT   African isolates of Potato virus Y";
RL   Arch. Virol. 154(12):1891-1900(2009).
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RN   [2]
RP   1-807
RA   Visser J.C., Bellstedt D.U.;
RT   ;
RL   Submitted (28-AUG-2009) to the EMBL/GenBank/DDBJ databases.
RL   Biochemistry, Stellenbosch University, Lab 165, Department of Biochemistry,
RL   JC Smuts Building, Van der Bijl Street, Stellenbosch, Western Cape 7600,
RL   South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .807
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum"
FT                   /strain="N"
FT                   /isolate="TT138E_111_104"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .807
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="ACZ26427.1"
FT                   /translation="MANDTIDAGGSNKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTV
FT                   PRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDV
FT                   GETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMAH
FT                   FSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPIRAREAHIQMK
FT                   AAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
XX
SQ   Sequence 807 BP; 281 A; 160 C; 183 G; 183 T; 0 other;

gq853666 Length: 807  25-NOV-2009  Type: N  Check: 1565  ..

       1  atggcaaatg acacaattga tgcaggagga agcaataaga aggatgcaaa
      51  acaagagcaa ggtagcattc aaccaaatct caacaaagaa aaggagaagg
     101  acgtgaatgt tggaacatct ggaactcata ctgtgccacg aattaaagcc
     151  atcacgtcta aaatgagaat gcccaagagt aagggtgcaa ctgtactgaa
     201  cttagaacat ttactcgagt atgccccaca gcaaattgac atctcaaata
     251  ctcgagcaac tcaatcacag tttgatacat ggtatgaagc agtacagctt
     301  gcttacgacg taggagaaac tgaaatgcca actgtgatga atgggcttat
     351  ggtttggtgc attgagaatg gaacctcgcc aaacatcaac ggtgtctggg
     401  ttatgatgga tggaaatgaa caagttgaat acccactcaa gccgattgtt
     451  gaaaatgcaa aaccaaccct taggcaaatc atggcacatt tctcagatgt
     501  tgcagaagcg tatatcgaaa tgcgcaacaa aaaggaacca tatatgccac
     551  gatatggttt agttcgaaat ctgcgtgatg gaagtttggc tcgttatgcc
     601  tttgactttt atgaagttac atcacgtaca ccaataaggg ctagagaggc
     651  acacattcaa atgaaagccg cagctctgaa atcagctcaa tcccgacttt
     701  tcggattgga tggtggcatt agtacacaag aggaaaacac agagaggcac
     751  accaccgagg atgtttctcc aagtatgcat actctacttg gagtcaaaaa
     801  catgtga