Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus-[Kahnooj:Iran] isolate TYLCV-Ker[IR:Ka21:06], complete genome.
ACC No: GU076449
Dated: 2010-12-16 | Length: 2770 | CRC: 789266203
ID GU076449; SV 1; circular; genomic DNA; STD; VRL; 2770 BP.
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AC GU076449;
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DT 16-DEC-2010 (Rel. 107, Created)
DT 16-DEC-2010 (Rel. 107, Last updated, Version 1)
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DE Tomato yellow leaf curl virus-[Kahnooj:Iran] isolate TYLCV-Ker[IR:Ka21:06],
DE complete genome.
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KW .
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OS Tomato yellow leaf curl virus-[Kahnooj:Iran]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2770
RX PUBMED; 21060815.
RA Lefeuvre P., Martin D.P., Harkins G., Lemey P., Gray A.J., Meredith S.,
RA Lakay F., Monjane A., Lett J.M., Varsani A., Heydarnejad J.;
RT "The spread of tomato yellow leaf curl virus from the Middle East to the
RT world";
RL PLoS Pathog. 6(10):E1001164-E1001164(2010).
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RN [2]
RP 1-2770
RA Heydarnejad J., Varsani A.;
RT ;
RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Protection Department, Shahid Bahonar University of Kerman, 22 Bahman
RL Ave, Kerman, Kerman 7616914111, Iran
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FH Key Location/Qualifiers
FH
FT source 1. .2770
FT /organism="Tomato yellow leaf curl virus-[Kahnooj:Iran]"
FT /host="Solanum lycopersicum"
FT /isolate="TYLCV-Ker[IR:Ka21:06]"
FT /mol_type="genomic DNA"
FT /country="Iran"
FT /collection_date="2006"
FT /db_xref="taxon:761707"
FT gene 129. .479
FT /gene="V2"
FT CDS 129. .479
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="ADG37279.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARFEGSPKAELRQPLQQPCCCPHCPRHKQATVMDVQAHV
FT PKAQNIQNVSKP"
FT gene 289. .1065
FT /gene="V1"
FT CDS 289. .1065
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="ADG37280.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSILN"
FT gene complement(1062. .1466)
FT /gene="C3"
FT CDS complement(1062. .1466)
FT /codon_start=1
FT /gene="C3"
FT /product="C3 protein"
FT /protein_id="ADG37281.1"
FT /translation="MDSRTGELITAPQAENGVFIWEIYNPLYFKITEHSQRPFLMSHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTESHDIKYKFY"
FT gene complement(1207. .1614)
FT /gene="C2"
FT CDS complement(1207. .1614)
FT /codon_start=1
FT /gene="C2"
FT /product="C2 protein"
FT /protein_id="ADG37282.1"
FT /translation="MQPSSPSTSHCSQVPIKVQHKISKKRPIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDIQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HKEGTGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1523. .2602)
FT /gene="C1"
FT CDS complement(1523. .2602)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="ADG37283.1"
FT /translation="MAPPKRFQINCKNYFLTYPQCSLTKEEALSQLQNLETPTNKKYIK
FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFYPNIQGAKSSSDVKSYI
FT DKEGDTLDWGEFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELASRDYILQFH
FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVSEELEMWVSENVMSSAARPWRPKSIIIEGA
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVNDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGEPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNISLKNWALKNATFVTLHEPL
FT FSSTNQGPTQDIQEETNKA"
FT gene complement(2152. .2445)
FT /gene="C4"
FT CDS complement(2152. .2445)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ADG37284.1"
FT /translation="MGSHISMCLSNSRGNSSAKISDSSTWYPQAGQHISIQTFRELNPV
FT PTSSLTSTRRETPSTGESFRSMEGLQEGDNNLQTTLTLQQLTLEVRQRLLEF"
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SQ Sequence 2770 BP; 753 A; 545 C; 612 G; 860 T; 0 other;
gu076449 Length: 2770 16-DEC-2010 Type: N Check: 3255 ..
1 accggatggc cgcgccccgc gtgggtccca cacacgtcgc tatcatccaa
51 tcaaattgat gactgaaacg ttagataatt ggttatttgt ccttataaac
101 ttagtcccca agtttgctgt cttgcaatat gtgggatcca cttcttaatg
151 aatttcctga atccgttcac ggatttcgtt gtatgttagc tattaaatat
201 ttgcaggccg ttgaggaaac gtatgagccc aacactttgg gccacgattt
251 aattagggat cttatatctg ttgtaagggc tcgtgactat gtcgaagcga
301 cccggcgata taatcatttc cacgcccgtt tcgaaggttc gccgaaggct
351 gaacttcgac agcccctaca gcagccgtgc tgctgccccc attgtccaag
401 gcataaacaa gcgacggtca tggacgtaca ggcccatgta ccgaaagccc
451 agaatataca gaatgtatcg aagccctgat gttccccgtg gatgtgaagg
501 cccatgtaaa gtccagtctt atgagcaacg tgatgatatt aagcatactg
551 gtattgttcg ttgtgttagt gatgttactc gtggatctgg aattactcac
601 agagtgggta agaggttctg tgttaaatcg atatattttt taggtaaagt
651 ctggatggat gaaaatatca agaagcagaa tcatactaat caggtcatgt
701 tcttcttggt ccgtgataga aggccttatg gaagcagccc aatggatttt
751 ggacaggttt ttaatatgtt cgataatgag cccagtaccg caaccgtgaa
801 gaatgatttg cgggataggt ttcaagtgat gaggaaattt catgctacag
851 ttattggtgg gccctctgga atgaaggaac aggcattagt taagagattt
901 tttagaatta acagtcatgt aacttataat catcaggagg cagccaagta
951 tgagaaccat actgagaacg ccttgttatt gtatatggca tgtacacatg
1001 cctctaatcc agtgtatgca actatgaaaa tacgcatcta tttctatgat
1051 tcaatattaa attaataaaa tttatatttt atatcatgac tttctgttac
1101 atttattgtg ttttcaagta catcatacaa tacatgatca actgctctga
1151 ttacattgtt tatggaaatt acaccaagac tatctaaata cttaagaact
1201 tgatatctaa atactcttaa gaaacgacca gtctgaggct gtaatgtcgt
1251 ccagattcgg aagttgagaa aacatttgtg aatccccagt accttcctta
1301 tgttgtggtt gaatcttatc tgaatggaaa tgatgtcgtg gctcattaga
1351 aatggcctct ggctgtgttc tgttatcttg aaatagaggg gattgtatat
1401 ctcccagata aaaacgccat tctctgcttg aggagcagtg atgagttccc
1451 ctgtgcgtga atccatgatt attgcagttg aggtggaggt agtatgagca
1501 accgcagtct aggtctacac gcttacgcct tattggtctc ttcttggata
1551 tcttgtgttg gaccttgatt ggtacttgag aacagtggct cgtggagggt
1601 gacgaaggtt gcattcttga gagcccaatt tttcaaggat atgttttttt
1651 cttcgtctag atattcctta tatgaggatg taggtcctgg attgcagagg
1701 aagatagtgg gaattccccc tttaatttga atgggttccc cgtactttgt
1751 gttgctttgc cagtccctct gggcccccat gaattccttg aagtgcttta
1801 aataatgcgg gtctacgtca tcattgacgt tataccacgc atcattactg
1851 tacacctttg ggcttaggtc taaatgtcca cataaataat tatgtgggcc
1901 tagagacctg gcccacattg ttttgccggt tctgctagca ccctcgatga
1951 taatactctt aggtctccat ggccgcgcag cggaagacat gacgttttcc
2001 gacacccaca tttcaagttc ctctgaaact tgattaaaag aagaagacaa
2051 aaagggagaa atataaggag ccggaggctc ctgaaaaatc ctatctaaat
2101 tactatttaa attatgaaat tgcaaaatat aatctctgga ggctaattcc
2151 ctcagaactc taagagcctc tgccttactt ccagagttaa ttgctgcagc
2201 gtaagcgtcg tttgcagatt gttgtccccc tcttgcagac cttccatcga
2251 tctgaaactc tccccagtcg agggtgtctc cctccttgtc gatgtaagac
2301 ttgacgtcgg aactggattt agctccctga atgtttggat agaaatgtgc
2351 tgccctgctt ggggatacca agtcgaagaa tcgctgattt tggcacttga
2401 atttcccctc gaattggata agcacatgga gatgtggctc cccattctcg
2451 tgaagttccc tgcaaacttt gatgtatttt ttatttgttg gggtttctag
2501 gttttgtaat tgggaaagtg cctcttcttt tgttaatgag cactgaggat
2551 atgtgaggaa ataatttttg caatttattt ggaaacgctt agggggagcc
2601 atatggtcaa tgagtaccga ttgaccaaga tttacactta tccctggtat
2651 atcggtactc aatatatagt gagtaccaaa tggcattttg gtaatttggt
2701 aaaagtacaa tgcaatttaa aattcaaaat tcaaaaatca aatcagtaaa
2751 gcggccatcc gtataatatt