Sequence of DPV Merino Walk virus
Merino Walk virus GP (GP) and NP (NP) genes, complete cds.
ACC No: GU078660
Dated: 2010-04-27 | Length: 3364 | CRC: -650694830
ID GU078660; SV 1; linear; genomic RNA; STD; VRL; 3364 BP.
XX
AC GU078660;
XX
DT 16-MAR-2010 (Rel. 104, Created)
DT 27-APR-2010 (Rel. 104, Last updated, Version 2)
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DE Merino Walk virus GP (GP) and NP (NP) genes, complete cds.
XX
KW .
XX
OS Merino Walk virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC Old world arenaviruses; unclassified Old world arenaviruses.
XX
RN [1]
RP 1-3364
RX DOI; 10.1099/vir.0.017798-0.
RX PUBMED; 20071489.
RA Palacios G., Savji N., Hui J., Travassos da Rosa A., Popov V., Briese T.,
RA Tesh R., Lipkin W.I.;
RT "Genomic and phylogenetic characterization of Merino Walk virus, a novel
RT arenavirus isolated in South Africa";
RL J. Gen. Virol. 91(Pt 5):1315-1324(2010).
XX
RN [2]
RP 1-3364
RA Palacios G., Savji N., Hui J., Travassos da Roas A., Popov V., Briese T.,
RA Tesh R., Lipkin W.I.;
RT ;
RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Center for Infection and Immunity, 722 West 168th Street 18th Floor, New
RL York City, NY 10032, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3364
FT /organism="Merino Walk virus"
FT /segment="S"
FT /host="Myotomys unisulcatus (bush Karoo rat)"
FT /isolate="Merino Walk"
FT /mol_type="genomic RNA"
FT /country="South Africa:Merino Walk, Eastern Cape"
FT /collection_date="1985"
FT /db_xref="taxon:743685"
FT gene 53. .1546
FT /gene="GP"
FT CDS 53. .1546
FT /codon_start=1
FT /gene="GP"
FT /product="GP"
FT /protein_id="ADD63337.1"
FT /translation="MGQIVTFFQEVPHVIEEVMNVVLITLSILAILKGLYNLLTCGIGN
FT LIIFLLLAGRSCEATDGSLYKGEFRLQNITWNSASLNETMPLSCSKNNSHHYIYLKNET
FT GLEVTLTNTSILNHKFCNLSDAHKKALYDHSLMVIVTQFHLTIPNFGQWEAMSCDFNGG
FT NITIQYNLSHSTAVKAANHCGTLANGILETFFKMFWGRDISNAFQIPDNGVLRNCFKTS
FT YKYLIIQNTSWADHCVMSVPHPIGPISVLNSQVRSIYLSRRLKGTFSWSLSDSEGNSMP
FT GGYCLEKWMLIAAEMKCFGNTAIAKCNLNHDSEFCDMLRLFDYNKQAIERLKGELEQTL
FT NTFRKAVNALINDQLIMRNHLKDLMGIPYCNYTKFWYLNSTKTGVVSLPKCWLVSNGSY
FT LNVTHFSNDIEQEADNMITEMLRKEYIERQGKTPLGLVDIFLFTTSFYLVTVFLHLVKF
FT PTHRHIVGQGCPKPHRLTSMAICSCGVYGQPGLPVKWKR"
FT gene complement(1619. .3304)
FT /gene="NP"
FT CDS complement(1619. .3304)
FT /codon_start=1
FT /gene="NP"
FT /product="NP"
FT /protein_id="ADD63338.1"
FT /translation="MSNSKEIKSFQWTVALRRELSQFGASVKSQVLRDAQMLLNSLDFS
FT EVVNVQRMMRKEKRDDSDLKRLRDLNQAVNNLVELKSIQQKNVLKVGKLSADDLMTLAA
FT DIEKLKAKVIRTERPLSAGVYMGNLTGQQLEQRAKLLKMVGMSGARPQGNGIVRVWDLK
FT DSSLLNNQFGTMPSLTMACMAKQGQVQLSDVVHALSDLGLIYTAKYPNMTDLEKLSETH
FT PILNIIQEQQSSINISGYNFSLSAAVKAGAVMLDGGNMLESLKVTPQNVESILQSILKV
FT KRQYGMFITESPGERNPYENILYKVCLSGNGWPYISSRTAIQGRAWDNTIVDLGAGGQS
FT TKSNSPEKRPPGTPPVGLSFSQMMLLKDLMSGLDPNAKTWIDIEGRANDPVEVALYQPS
FT NGQVVHFYREPVDIKQFKQDSKFSHGIDITDLFPSQPGLTSAVIEHLPQNMVLTCQGSE
FT DIMDLLKSQGRRDIKTIDVSLSKEASRQFEDKVWDLHKGLCKLHTGVVVVKTKKGKMEI
FT TPHCALMDCLMFEAATNGGTVPTKVNPILPNDLIFRTSTKKVTL"
XX
SQ Sequence 3364 BP; 935 A; 747 C; 676 G; 1006 T; 0 other;
gu078660 Length: 3364 27-APR-2010 Type: N Check: 4332 ..
1 cgcaccgggg atcctaggca tttttggaag cgcattacta tttggctcag
51 aaatggggca gatagtgact tttttccaag aagtacccca tgtgattgaa
101 gaggtgatga atgtggttct gataacctta agtattcttg caatattgaa
151 gggcttgtac aatctattga cctgtggcat aggtaaccta ataatcttcc
201 tgctccttgc agggagatca tgtgaagcta ccgatggaag cctctataaa
251 ggggaattta ggctccaaaa cataacatgg aactcagcat cacttaatga
301 aacaatgcct ctttcctgtt caaaaaacaa cagccatcat tacatatatc
351 ttaagaacga gacaggactg gaagtgacac tcacaaacac ttctatactc
401 aaccataagt tctgtaacct cagtgatgct cacaagaagg cattgtatga
451 tcatagttta atggtaattg tgacacaatt tcaccttact ataccaaatt
501 ttggccaatg ggaggcaatg tcctgcgact ttaatggcgg caatataaca
551 atacagtaca atttgtcaca ttctacagcc gttaaagcag caaaccactg
601 cgggacttta gccaatggga tactagaaac atttttcaag atgttttggg
651 gtagagacat cagtaatgca tttcagatac ctgacaatgg agttttgaga
701 aattgtttca aaacatccta taaatattta ataatacaga acacctcttg
751 ggctgaccat tgtgtcatgt cagtacccca tcccataggt cccatttctg
801 tgttaaattc acaggtacgt tctatttatc tctccaggag gctgaaaggg
851 actttttcat ggtctctaag cgactcagaa ggtaactcaa tgcctggagg
901 gtactgtctt gaaaaatgga tgttaattgc agcagaaatg aagtgctttg
951 gcaacacagc aatagcaaaa tgtaatttaa accatgattc agaattttgt
1001 gacatgctga gactattcga ttacaataag caggctattg aaagactaaa
1051 aggagaactt gaacaaacac ttaacacctt tagaaaagct gtcaatgcat
1101 tgatcaatga ccaattaatc atgagaaacc atctaaagga tttaatgggg
1151 ataccctact gtaactacac aaaattttgg tatctaaaca gcacaaaaac
1201 tggtgttgtc tcactaccca aatgctggtt ggtctcaaac ggaagctatc
1251 ttaatgtcac tcatttcagc aatgatatcg agcaggaggc tgacaacatg
1301 ataacagaaa tgttaaggaa ggagtacatt gagagacagg ggaaaacacc
1351 acttgggctt gtcgacatct ttttgttcac cacaagtttc tatctggtga
1401 cagtgttcct acacttggtt aaatttccga cacatcgaca catcgttggt
1451 caaggatgtc caaagccaca tcgtttaaca tccatggcca tttgcagctg
1501 tggggtgtat ggtcaacctg gcctgccagt caaatggaaa cgctaacctg
1551 ccttccccag caggcccccg tgacccacca cctttcggtg gtgggtcacg
1601 ggggcactcc ttactggttt agagtgtcac tttctttgtg cttgttctaa
1651 aaatcaagtc atttggtaga atggggttga ctttggttgg cacggtgcca
1701 ccatttgtgg ctgcctcgaa cattaagcag tccatcaagg cacagtgagg
1751 tgttatctcc attttcccct tctttgtttt caccacaaca acacctgtgt
1801 gaagtttgca caacccttta tgaagatccc aaactttatc ctcaaactgt
1851 ctggatgctt ctttagatag agagacgtca atggttttta tatctctcct
1901 accttgactt ttcagcagat ccattatgtc ttctgaccct tgacaagtca
1951 agaccatatt ttgtggtaaa tgttcaatca ctgcacttgt taaaccaggt
2001 tgtgatggaa atagatcagt tatgtcaata ccatgactga attttgagtc
2051 ttgtttaaac tgtttaatgt caactggctc tctataaaag tgaaccactt
2101 gaccatttga tggttgatac agggccactt ctacagggtc attcgctctc
2151 ccttctatgt caatccatgt ttttgcattg ggatcaagac ctgacattag
2201 gtccttaaga agcatcattt gtgaaaaaga cagtccaact ggtggggtac
2251 cagggggtct tttctcagga gagtttgatt tggtagattg gcctccggca
2301 cccagatcca caatagtgtt gtcccaagcc ctgccttgta tagctgttct
2351 cgatgatatg tagggccatc cattacctga aagacacacc ttgtataaga
2401 tgttctcata agggttcctt tctcctggag actctgtgat aaacatacca
2451 tactgcctct tcactttcag tattgactgg aggattgact caacattctg
2501 tggggtgact ttcagacttt ccagcatgtt ccccccatca agcatgactg
2551 caccagcctt cactgctgca ctcaaactaa aattatagcc tgagatgttg
2601 atagatgatt gctgttcctg aatgatgttc aagattgggt gagtctcact
2651 caacttctcc aagtccgtca tgttaggata cttagcagtg tagatcagcc
2701 ctaaatcact gagggcatga acaacatcag atagttgaac ctggccttgt
2751 tttgccatgc aagccattgt caggctaggc atagtcccga attgattatt
2801 taaaagagat gaatccttta agtcccacac ccgtacaatg ccattgcctt
2851 gaggtcttgc cccactcatt ccaaccatct ttagcagttt tgccctctgt
2901 tctaattgct gcccggtcag gttgcccata tacacacctg cacttaaagg
2951 tctctcagtt cggattacct ttgctttgag tttctcaatg tcagcagcca
3001 gggtcatcag gtcatcagct gacaatttcc ccacttttag gacatttttc
3051 tgttggatgg atttcagttc aacaaggttg ttgacagctt ggttgagatc
3101 tctgagcctt ttcagatctg aatcatctct cttttccttt ctcatcatcc
3151 tttgaacatt caccacttca gagaagtcta aactgttcaa aagcatttga
3201 gcatctctta gtacctgtga cttcacactg gcaccaaact gagacaattc
3251 tctcctcaaa gcaactgtcc actgaaagga tttgatttcc tttgagttgg
3301 acatgtttgc caaagttttg caaagtggaa tttgcgctct tttaagccta
3351 ggatccactg tgcg