Sequence of DPV Merino Walk virus
Merino Walk virus Z protein and L genes, complete cds.
ACC No: GU078661
Dated: 2010-04-27 | Length: 7198 | CRC: 2060607420
ID GU078661; SV 1; linear; genomic RNA; STD; VRL; 7198 BP.
XX
AC GU078661;
XX
DT 16-MAR-2010 (Rel. 104, Created)
DT 27-APR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Merino Walk virus Z protein and L genes, complete cds.
XX
KW .
XX
OS Merino Walk virus
OC Viruses; ssRNA negative-strand viruses; Arenaviridae; Arenavirus;
OC Old world arenaviruses; unclassified Old world arenaviruses.
XX
RN [1]
RP 1-7198
RX DOI; 10.1099/vir.0.017798-0.
RX PUBMED; 20071489.
RA Palacios G., Savji N., Hui J., Travassos da Rosa A., Popov V., Briese T.,
RA Tesh R., Lipkin W.I.;
RT "Genomic and phylogenetic characterization of Merino Walk virus, a novel
RT arenavirus isolated in South Africa";
RL J. Gen. Virol. 91(Pt 5):1315-1324(2010).
XX
RN [2]
RP 1-7198
RA Palacios G., Savji N., Hui J., Travassos da Roas A., Popov V., Briese T.,
RA Tesh R., Lipkin W.I.;
RT ;
RL Submitted (06-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Center for Infection and Immunity, 722 West 168th Street 18th Floor, New
RL York City, NY 10032, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .7198
FT /organism="Merino Walk virus"
FT /segment="L"
FT /host="Myotomys unisulcatus (bush Karoo rat)"
FT /isolate="Merino Walk"
FT /mol_type="genomic RNA"
FT /country="South Africa:Merino Walk, Eastern Cape"
FT /collection_date="1985"
FT /db_xref="taxon:743685"
FT CDS 100. .369
FT /codon_start=1
FT /product="Z protein"
FT /protein_id="ADD63339.1"
FT /translation="MGSKTSKISNETDPYKDERVEMIPDASHLGPLFCKSCWFENKGLI
FT ACHDHYLCHKCLTVLLTVSERCPLCKHPLPTKVRLSTLPTCPAE"
FT CDS complement(492. .7175)
FT /codon_start=1
FT /product="L"
FT /protein_id="ADD63340.1"
FT /translation="MEERVSEIKHLVCTYLREDVRISRQRLTLLSQSEPKFILIEGLKL
FT LSLCIEIDSCEQNGCNHNTDNKSVEVILLENKILCPGLPFVVPDGYKLIGSTLILLECF
FT VRNNTANFEVKYSEDLTKLSALKNDLLNIGVKMIPLVDGRVNYYTSLMPEWVCDRLKYL
FT LTTLLEYSQESTALFEESEYARLVESLTNTASRSSGIDSINVLKDCRAQHHQDILSICH
FT EGINNMMTELEIKTLLEKEYNVFHNKLQSGKLEKRIIRTDREKLLREFGDLYEKEGLPP
FT TDDVWELIREGISSSPILRFVYAKFENQESKESIYNQSDTSNCLPLNVIRLLNKIKSLK
FT VFNTRRKFMLMLDTIVLLSYIKHGDNTYPIECWLGNSFLSVNDRLVSLNATKEDLMKWL
FT KRRTAKTAVATENEMTRLNTILHELIGKVMLKISKALKSVNLSFETYFVSPDFYHSVTL
FT EQIEDFKMEGVQPSMYYRKLESTDYSYKLEEFSVDTASDFLMLSSLSLGLINSMKTSST
FT AKLRQNEVGKNRYDIVHCKESYYQTLKTPKGTFSLLYQKTGEGSKCYSINSSLLGHVSS
FT FYADPKRYFVPIFSHNILSEMITTMMSWIIESGEVTQNLKEINAVLKFIVVLILSHPTK
FT RAQKLLQNLRYFIMAYSSEYHLTSLLDKLKETLITPIEYVLFRLLRCLLRLLLVDTKKT
FT VFSNVFKFILNTSYLCHFITKETPDRLTDQIKCFEKFLEPKIKFGSVNVNSKDVPSEEE
FT LLDTITLGEKFLNKSTCKDEKFEFGVPGVSRELFSCMLSAFNQGLLYEQSETLSKFKDP
FT LMVSGCATALDLASNKSVVVNKYEQGQRVLDYNFNKIVSNAVCEISEVFHRKGRHCLLK
FT SDYDYKVQKIISRLVLGGGDKKGSLQKNKRESDAEWSDVSDVFDSQQSDYYQRIKDAVD
FT DVVSRYGLDASNQATKEVKPCLSDLFKANIDKLQYQLILSEITRHPVEEFDFTLFDDHF
FT YQNICTSLYSDNEISSKYFLRESSSLVSIKDMSKALCKKFLDDEQYFSCFKLILLQMHA
FT DKMVGRFSHYKRKTINYKFDMEEFQKGVRLSERESNSEAISKALSLNNFTSSALKNLCF
FT YSEESPQSYNSVSPDTGRLKFALSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEAFTNQ
FT FKGSCLNNEKEFENAIISMKLNVSLANLSYSMDHSKWGPMMCPLLFIACLQNIKLAPSM
FT GLDCNSSKEYITTLLSWHIHKIVEIPFNVVNAMMKSYLKRGLGLMKNSSITETEAFFFS
FT SFDSNIIPSHISSVLDMGQGILHNTSDFYGLISERFINYCLRLIFPDTIESYTSSDDQI
FT TLFGPSISKLAEDEDELVEVILNFHYYLSDQLNKFVSPKSSIGRFVAEFKSRFFVWGEE
FT VPLLTKFVAASLHNIKCKEPHQLSETIDTIIDQCVANGVPLKLCNLIQLRVIRLLEYSQ
FT YPIDPFLLNVHSDAKDWVDGNRGYRIMRNIERIDPEGTKLIRSIMRKLYNQLKQGKLHE
FT EFTASFLSGDIYQNLYKICSMFGVEVGNTDLFSIGWLNLSACMPLRMVLRQKVLYPGIV
FT NVEDEKLPTIVKTLQSKLSQHFTKGAQKLLSESINRSAFQSSIASGFVGLCKTIGSKCV
FT RDSDRGTHYIKSVLNCLKKVEGVVPLTIEGMQVWKLNTDLKSIDDCWVVQLLRPILWDY
FT FCIGLSTALEIGPWVLGEPKIKTVSKVIKFRCCDYFPTRPSSTRILEDRVNYNHIIHSI
FT RRLYPDVFEKYLLPFMSDLAATKMKWSPRIKFLDLCVVLDVNCEALSLVSHVVKWKREE
FT LYTVLSSDLAVMHERQNTTLVDQRVVCSEDICKNFLKQLFFESYLRSFVATSRTLGSFS
FT WFPHRTSLPESEGLKMLGPFATFVEKVIYKGIERPMYRYDLFMGFSHLTYVIENPVFNL
FT SQLIASGLTETGVYESLGAFWDALKGLKPGSIEILVTIRFRIKSQGESYAQTFNLILSF
FT RGSIAEGNRFIPSSLGVQYSGQTDDKYLMDCWNLVKADETLKIGEAHWFISMSNVSDYF
FT VERVDGDSVLVCKVVLTKELMSVLKEDMVRVGPEWEYEPIVVRQGSLWEGEHRMIDIVV
FT DINDDDFRVFMDELLDDHFDIFIKSLHNIIKDRLRSKRSFESLDMLGVLSSKDGVDAIG
FT IINQCFQGIEGWCEFKTHKLCYSNSLGKVMVACSNGSKRLRGVQCEELGWSPGVEDID"
XX
SQ Sequence 7198 BP; 2178 A; 1610 C; 1171 G; 2239 T; 0 other;
gu078661 Length: 7198 27-APR-2010 Type: N Check: 2171 ..
1 taggctatag tgaatatctt tctttgtgtc tcagtgggtg aactctcatc
51 gtttcagcca caccgaggca aaaaccaggc ctcaacccaa ccccaaaaaa
101 tgggctctaa aacctccaaa atcagcaacg aaaccgaccc ctacaaagat
151 gaaagggtgg aaatgattcc agatgcatca cacctaggtc cactattttg
201 taaaagctgt tggtttgaaa acaaagggct gattgcatgt cacgatcatt
251 atctctgcca caagtgtctg accgttttat taactgtcag tgagagatgt
301 cctctctgta aacatcccct gccaaccaag gtcaggctga gcacactacc
351 aacttgtcca gctgagtgag tcaaagttcc cccgcacagt caaccgatct
401 ccatcccaaa caagtcacct ccctcccccc ccggggggac cccccgccgg
451 gtgccccccc gggggagcag tgaaggacag gtcaaagagc cctaatcaat
501 gtcttccacc cctggagacc aacccaactc ttcacactgg acacccctca
551 accttttgct tccgttagaa caggcaacca tcaccttccc caaactgtta
601 ctatagcaca acttgtgtgt tttaaactca caccagcctt ctataccttg
651 gaagcactgg tttatgatgc caattgcatc aacaccatct ttggagctca
701 gaacacccaa catgtccaag ctctcaaaag accttttact tctaagtcta
751 tctttaataa tgttatgtag cgacttaata aatatatcaa agtgatcatc
801 caacagttca tccataaaaa ccctgaagtc atcatcattg atatcaacaa
851 caatgtcaat cattctatgc tctccttccc atagggaacc ctgtcgaaca
901 acaattggct catactccca ctcaggacct accctcacca tgtcctcttt
951 cagaacactc atcaattctt tggtcagcac aactttgcaa accaaaactg
1001 aatccccatc tactcgctcc acaaaataat cagaaacatt agacattgat
1051 atgaaccagt gggcctctcc tatttttaag gtttcatcag ccttgaccaa
1101 gttccaacaa tccatcaagt acttgtcgtc tgtctgacca ctgtactgga
1151 ccccaagtga actaggaata aatctgttgc cctccgcaat tgaccctctg
1201 aatgataaga tcaagttaaa cgtttgagca taagattccc cttgactttt
1251 aattctaaat cgtatagtta ccagaatttc aatggagcca ggcttcagtc
1301 ccttcagtgc atcccaaaat gcgccaagac tctcatacac cccagtctcc
1351 gtcagtccag atgcaatcaa ttgactgaga ttaaacacag gattctctat
1401 gacataagtc aagtgtgaaa accccatgaa caagtcatat ctgtacatag
1451 gtctttcaat ccccttgtaa ataaccttct caacaaatgt tgcaaaagga
1501 cccaacatct taagtccctc actctctggc aaagaggtcc tatgaggaaa
1551 ccaactgaag gaacctaatg ttctggaagt tgcaacaaag gatctcaaat
1601 aagactcaaa gaataactgt ttcaagaaat ttttgcaaat gtcctccgag
1651 catactaccc tttggtccac aagagttgta ttctgtcttt catgcataac
1701 tgctaggtca ctactcaaaa cagtgtacaa ctcttctctt ttccacttca
1751 caacgtgtga cactaatgag agagcctcac aattcacatc taggactaca
1801 cacaaatcta aaaattttat ccttggggac catttcatct ttgtagctgc
1851 cagatcactc ataaatggta acaaatattt ttcaaagaca tcagggtaaa
1901 gtcttcttat agaatgtata atatgattgt agttgactct atcctcaaga
1951 attctggtgc tagaaggtct agttgggaag taatcacaac atctaaattt
2001 tataactttg ctgacagttt taatctttgg ctcacccaac acccaaggcc
2051 caatttccaa agctgttgaa agcccgatac agaaataatc ccaaagtatt
2101 ggtctcagaa gttgtacaac ccaacagtca tcaattgatt ttagatctgt
2151 gtttaatttc caaacctgca tcccctctat tgttaatgga acaacaccct
2201 caaccttttt cagacagttg agaaccgact ttatataatg agttcccctg
2251 tcactatctc taacacattt gcttcctatt gttttacaca atccaacaaa
2301 accagatgca attgaacttt ggaaagcact cctatttata gactctgaga
2351 gcaacttctg agcaccttta gtaaaatgtt gagacaattt gctctgtaat
2401 gttttaacaa ttgtagggag tttctcatcc tccacattga cgattccagg
2451 atacaatacc ttctgcctca ggaccattct caaaggcata caggctgaca
2501 agttcaacca gcctattgag aacaggtctg tatttcccac ttcaacacca
2551 aacatggagc aaatcttgta caaattctga tagatgtccc ctgaaaggaa
2601 tgaggcggtg aactcctcat gtagtttgcc ctgttttaat tgattataca
2651 atttcctcat tatggatcta atcaatttgg tgccttctgg gtcaatcctc
2701 tctatattcc tcataattct ataacctcta tttccatcca cccagtcttt
2751 agcatcacta tggacattaa gtagaaacgg gtcaataggg tactgagagt
2801 attccagcaa tctaatcact ctcaactgaa tcaagttaca aagcttgagt
2851 ggaacaccat ttgcaacaca ctgatcaatg atagtgtcta tagtttctga
2901 caattggtga ggctctttac attttatgtt gtgtaaagag gcagcaacaa
2951 acttagtgag caaaggtact tcctcacccc atacaaagaa ccttgacttg
3001 aactcagcaa caaaccttcc aatagaactc ttaggactaa caaatttgtt
3051 gagctgatca ctgagataat aatggaaatt taaaataacc tccacaagtt
3101 catcttcatc ctctgccaat tttgatatag agggtccaaa aagggtgatt
3151 tgatcatcac ttgatgtgta tgactcaatt gtgtctggaa agatcaacct
3201 caaacaataa tttatgaacc tctctgaaat caatccatag aaatcagatg
3251 tgttgtgcag gataccttgc cccatatcta gtacagaaga tatatgagac
3301 ggtatgatat tggagtcaaa ggatgagaag aagaatgctt ccgtctcagt
3351 tatactagag tttttcatga ggcctagacc tcttttcaga tatgacttca
3401 tcattgcgtt gactacattg aatggtattt caacaatttt atgaatgtgc
3451 catgacaaca atgttgtgat gtattcctta cttgaattgc aatcaagccc
3501 cattgatggt gctagtttaa tgttttgtaa acaagcaata aaaagcaatg
3551 gacacatcat aggtccccac ttactatgat ccatactata acttaaattg
3601 gccaaagaaa cattgagttt catggagatt attgcattct caaattcttt
3651 ttcattattt aggcaactcc ctttaaactg attggtaaag gcctcaaagt
3701 aatcttcgat caaccttgtg aacatctttg ttcgaaggtc cccgatatac
3751 aactctctat taccacctac ttgttcttta taggataatg cgaattttaa
3801 gcgacctgtg tcaggtgata ctgaattgta agattgtggc gattcctctg
3851 aataaaaaca gagattttta agtgcagagc ttgtgaagtt attaagtgac
3901 aaggccttgc taatggcttc agagttgctt tcacgctcac tcagtcgaac
3951 acctttctga aactcttcca tatcaaattt gtaattgatc gtctttcttt
4001 tatagtgtga aaatctgcct accatcttgt ctgcatgcat ctgcaacaag
4051 attaatttaa aacatgagaa atactgctca tcatcaagaa acttcttaca
4101 taatgctttt gacatatcct taatggacac taaagaacta ctctccctta
4151 aaaaatattt acttgaaatc tcattatcag agtacaatga agtgcagatg
4201 ttctggtaaa aatgatcatc aaaaagtgta aaatcaaact cttctacagg
4251 gtgccttgtg atttcagata agattaactg atattgtagt ttgtcaatat
4301 ttgccttgaa caaatctgac aaacaaggct ttacttcctt ggttgcttga
4351 ttactagcat ccaaaccata tcgcgacaca acgtcatcca cagcgtcctt
4401 gatcctttga taataatctg attgttggct atcaaagacg tcagaaacat
4451 ctgaccattc tgcatctgat tctcttttgt tcttttgcag acttcctttt
4501 ttgtccccac cacctaagac cagcctggaa attattttct gaaccttata
4551 atcatagtca ctctttagaa ggcaatgtct tccttttcta tggaacacct
4601 cacttatctc acagactgca ttgctaacaa tcttattaaa gttgtagtct
4651 aaaactcttt gaccttgttc gtatttgtta acaacaacgc tcttgttact
4701 tgctaggtca agtgctgttg cgcaaccact caccatcaat gggtctttaa
4751 actttgataa tgtttcagat tgttcataaa gtagaccctg gttgaaagcc
4801 gagagcatgc aagagaataa ttctctagaa acaccgggga ctccaaattc
4851 aaatttttca tctttacatg ttgatttatt gagaaatttt tcccctaagg
4901 ttatcgtatc caataattct tcctcactcg gaacatcctt agaattcaca
4951 ttaacagacc caaatttgat cttaggttca aggaacttct caaaacactt
5001 aatttgatcc gtcagtctgt ctggagtttc tttggtgatg aagtggcaca
5051 aatatgatgt attcaaaatg aatttgaaaa catttgagaa cactgttttc
5101 ttagtgtcaa ccaaaagcag tcttaacaaa catcttaaca atctaaagag
5151 cacatattca attggggtta tcaatgtttc cttcaacttg tccaatagag
5201 atgttaaatg atattcagaa gaataagcca tgataaaata tctcaaattt
5251 tgtaggagtt tttgagctct tttagttggg tgacttaata tgagcactac
5301 aatgaatttc aaaactgcat taatctcttt caaattctga gtgacttcac
5351 cgctttcaat tatccaactc atcattgttg ttatcatttc tgacaaaatg
5401 ttatgcgaga atataggcac aaagtacctt tttgggtctg cataaaatga
5451 tgacacatgg cccagtaatg aactatttat tgagtaacat ttggaacctt
5501 caccagtctt ttgatacaat aatgagaagg tgccctttgg ggtttttaaa
5551 gtttgataat atgattcttt gcaatgcact atgtcatatc tatttttacc
5601 cacttcattt tgcctgagct ttgctgttga cgatgtcttc attgagttga
5651 tgagtcctag ggacaaagat gacaacatta aaaagtcact tgctgtgtcc
5701 actgaaaatt cttccaattt gtatgaataa tcagtcgatt cgagttttct
5751 atagtacatg gatggttgca caccctccat tttaaagtcc tcaatttgct
5801 ccaatgtaac agagtgataa aaatcaggtg aaacaaaata tgtctcaaag
5851 gatagattta ctgatttcaa tgcctttgag atcttcagca taactttccc
5901 aataagctca tgtaatatag tgttcaatct agtcatttca ttctcagtag
5951 ccacggctgt cttcgcagtt cgccttttga gccacttcat caggtcctcc
6001 ttagtggcgt tgaggctgac taatctatca ttaacactca agaaagagtt
6051 cccaagccaa cattcaatgg ggtaagtgtt gtctccatgt ttgatatatg
6101 acaacagcac gatggtatcc aacatcagca tgaatttcct cctagtatta
6151 aagactttca agctcttgat cttattcaac agcctgatta catttaacgg
6201 caggcagttg cttgtatcac tttggttgta aatagactct ttagactctt
6251 ggttttcaaa tttagcatag acaaacctca atattgggga tgaacttatc
6301 ccttctctta tcaattccca cacatcgtct gtaggaggga gaccttcctt
6351 ctcataaagg tccccaaact ctcttaatag tttttctctg tctgtcctaa
6401 tgatcctttt ctctaattta ccactttgta atttattgtg gaacacattg
6451 tattccttct ctaacaaggt ttttatttcc aattcagtca tcatgttgtt
6501 gataccttcg tgacatattg acaaaatgtc ctgatggtgt tgtgctctac
6551 agtcttttaa aacattgata ctatcaatac ctgaggatct tgatgctgtg
6601 tttgtcagtg attcaaccaa tctagcatat tctgactcct caaacagtgc
6651 agtggactct tgagaatact ctaatagtgt tgtcaacaaa tattttaacc
6701 tgtcgcagac ccattcaggc atcaaacttg tgtaatagtt caccctacca
6751 tctactaaag gaatcatttt gacacctatg tttagtaagt cattctttaa
6801 tgcagacaat ttagtgagat cttctgaata tttcacttca aagtttgctg
6851 tattattacg gacaaagcat tccaacaata ttaatgtgct tccaatcaat
6901 ttgtatccat caggaacaac aaaaggtaat cccgggcaga ggatcttgtt
6951 ctctaatagg atgacttcaa cagatttgtt gtccgtattg tgattacagc
7001 cattctgttc gcacgagtca atttctatac aaagagatag aagtttaaga
7051 ccttctatca agataaactt cggttcactc tgtgacaaaa gtgtcaaccg
7101 ctgtctgcta attcgaacat cttctctgag ataagtgcaa accaaatgtt
7151 tgatctcact taccctctct tccatggcgc aatccttaaa gcctaggt