Sequence of DPV Cucumber mosaic virus
Cucumber mosaic virus isolate New Delhi segment RNA3, complete sequence.
ACC No: GU111229
Dated: 2011-03-15 | Length: 2214 | CRC: -392017470
ID GU111229; SV 1; linear; genomic RNA; STD; VRL; 2214 BP.
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AC GU111229;
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DT 11-NOV-2009 (Rel. 102, Created)
DT 15-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Cucumber mosaic virus isolate New Delhi segment RNA3, complete sequence.
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KW .
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OS Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC Cucumovirus.
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RN [1]
RP 1-2214
RX PUBMED; 20978836.
RA Koundal V., Haq Q.M., Praveen S.;
RT "Characterization, genetic diversity, and evolutionary link of Cucumber
RT mosaic virus strain New Delhi from India";
RL Biochem. Genet. 49(1-2):25-38(2011).
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RN [2]
RP 1-2214
RA Koundal V., Dubey D., Praveen S.;
RT ;
RL Submitted (15-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL Division of Plant Pathology, I.A.R.I., Pusa, New Delhi, Delhi 110012, India
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CC GenBank Accession Numbers GU111227-GU111229 represent the complete
CC genome of Cucumber mosaic virus isolate New Delhi.
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FH Key Location/Qualifiers
FH
FT source 1. .2214
FT /organism="Cucumber mosaic virus"
FT /segment="RNA3"
FT /host="tomato"
FT /isolate="New Delhi"
FT /mol_type="genomic RNA"
FT /country="India"
FT /db_xref="taxon:12305"
FT CDS 122. .973
FT /codon_start=1
FT /product="3a protein"
FT /note="movement protein"
FT /db_xref="InterPro:IPR000603"
FT /db_xref="UniProtKB/TrEMBL:D1LZE1"
FT /protein_id="ACY66904.1"
FT /translation="MAFQGTSKTLTQQSSAATSDELQKILFSPEAIKKMATECDLGRHH
FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELSSKGYMSVPQVLCAVTRTVSTDAE
FT GSLRIYLADIGDKELSPIDGQCVTLHNHDLPALVSFQPTYDCTMETVGNRKRCFAVVIE
FT RHGLYWGIPVPASVCSNWQARFSSKNYNSHRSAAGNTLTFPLNSLAGGKKPSAIASLPK
FT SQLNSIESSQYVLTNAKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGTLV
FT FS"
FT CDS 1255. .1911
FT /codon_start=1
FT /product="3b protein"
FT /note="coat protein"
FT /db_xref="GOA:Q9WAB3"
FT /db_xref="InterPro:IPR000247"
FT /db_xref="UniProtKB/TrEMBL:Q9WAB3"
FT /protein_id="ACY66905.1"
FT /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT LAAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
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SQ Sequence 2214 BP; 506 A; 523 C; 539 G; 646 T; 0 other;
gu111229 Length: 2214 15-MAR-2011 Type: N Check: 4806 ..
1 gtaatcttac cactgtgtgt gtgtgtgtgt gcgtgtgtcg cgtcgtgtcg
51 agtcgtgttg tccgcacata agagtcgtgc tgtccgcaca ttttcttttc
101 agtgtgttag attcccgagg catggctttc caaggtacca gtaagacttt
151 aactcaacag tcctcagcgg ctacgtctga cgaacttcaa aagatattat
201 ttagccctga agccattaag aagatggcta ctgagtgtga cctaggccgg
251 catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc
301 cgaagtaacc catggtcgta ttgcttcttt ctttaagtct ggatatgatg
351 ctggtgaatt aagctctaaa ggatatatga gcgttcctca agtgttgtgt
401 gctgttactc gaacagtttc caccgacgct gagggatctt tgagaattta
451 cctagctgat ataggcgaca aggagttatc tcctatagat ggacagtgcg
501 tcacattaca taaccatgat ctacccgctt tagtgtcttt ccaaccgacg
551 tatgattgta ctatggaaac cgttgggaat cgtaagcggt gtttcgctgt
601 tgttatcgaa agacatgggt tatattgggg tataccggta ccagctagcg
651 tgtgtagtaa ttggcaagca cggttttctt ctaagaatta caactcacat
701 cgcagcgcag ctgggaacac cctcacattt ccgcttaaca gcctagctgg
751 gggaaagaaa ccgtctgcca tcgctagcct gccgaagtcg caattgaaca
801 gcatagaatc ttcgcaatac gttttaacga atgcgaagat caatcagaat
851 gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccatcgcaat
901 cgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta
951 acggtacttt agtgttttcg tagcgtttta gtatatagtt atatgtgagt
1001 ctgtacataa tattatatct atagtgtcct gtgtgagttg atacagtaga
1051 cactgtgacg cgatgttgtg ttgagaagag agcacatctg gttttagtaa
1101 acccacaaca tatctttgag gttcaattcc tctcgttccc tgttgggccc
1151 ctttactttt tcatggatgc ttctccacga gattgcgttt cgtctactta
1201 tcctaagagt attgtgctgt gtttactctt tgtgtagtag atttgagtcg
1251 agtcatggac aaatctgaat caaccagtgc cggtcgtaat cgtcgacgtc
1301 gtccgcgtcg tggttcccgc tccgcttcct cctccgcgga tgctaacttt
1351 agagtcttgt cgcagcagct ttcgcgactt aacaagacgt tagcagctgg
1401 tcgtccaact attaaccacc caacctttgt gggtagtgaa cgctgtaaac
1451 ctgggtacac gttcacatct attaccctga agccgccaaa aatagaccgc
1501 gggtcttatt atggtaaaag gttgttgcta cctgattcag tcacggagtt
1551 cgataagaag cttgtttcgc gcattcaaat tcgagttaat cctttgccga
1601 aatttgattc taccgtgtgg gtgacagtcc gtaaagttcc tgcctcctcg
1651 gacttatccg ttgccgctat ctctgctatg tttgcggacg gagcctcacc
1701 ggtactggtt tatcagtatg ctgcatccgg cgttcaagcc aacaacaaat
1751 tgttgtacga tctttcggcg atgcgcgctg atattggcga catgagaaag
1801 tacgccgtcc tcgtgtattc aaaagacgat gcgctcgaga cggacgagtt
1851 ggtacttcat gttgacatcg agcaccaacg cattcccaca tctggggtgc
1901 tcccagtttg aatccgtgtt tttcccagaa tcctccctcc ggtcctgtgg
1951 cgggagctga gttggtagtg ttgctataaa ctgcctgaag tcactaaacg
2001 ctttgcggtg aacgggttgt ccatccagct tacggctaaa atggtcagtc
2051 gtggagaaat ccacgccagt agacttacaa gtctctgagg tgcctttgaa
2101 accatctcct aggtttcttc ggaaggactt cggtccgtgt acttctagca
2151 caaggtgcta gttttagggt acgggcatcc ccccacttca gtgggggtct
2201 ctcgaaggag acca