Sequence of DPV Bhendi yellow vein mosaic virus
Bhendi yellow vein India virus [India:Srinivaspur OYSK3:2006] segment DNA-A, complete sequence.
ACC No: GU112014
Dated: 2012-05-20 | Length: 2744 | CRC: -134831509
ID GU112014; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
XX
AC GU112014;
XX
DT 02-JAN-2011 (Rel. 107, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Bhendi yellow vein India virus [India:Srinivaspur OYSK3:2006] segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Bhendi yellow vein India virus [India:Srinivaspur OYSK3:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2744
RX PUBMED; 22447131.
RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA Krishna Reddy M.;
RT "Molecular characterization of distinct bipartite begomovirus infecting
RT bhendi (Abelmoschus esculentus L.) in India";
RL Virus Genes 44(3):522-535(2012).
XX
RN [2]
RP 1-2744
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT "Molecular genetic diversity of begomoviruses infecting okra in India";
RL Unpublished.
XX
RN [3]
RP 1-2744
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT ;
RL Submitted (29-SEP-2009) to the INSDC.
RL Division of Plant Pathology, Indian Institute of Horticultural Research,
RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /organism="Bhendi yellow vein India virus
FT [India:Srinivaspur OYSK3:2006]"
FT /segment="DNA-A"
FT /host="Abelmoschus esculentus (okra)"
FT /isolate="OYSOK3"
FT /mol_type="genomic DNA"
FT /country="India:Srinivaspur, Karnataka"
FT /isolation_source="leaf"
FT /collected_by="M.Krishnareddy"
FT /collection_date="2006"
FT /db_xref="taxon:908055"
FT gene 121. .486
FT /gene="AV2"
FT CDS 121. .486
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:E7BNQ4"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ4"
FT /protein_id="ADO40578.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL
FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSKGM"
FT gene 281. .1051
FT /gene="AV1"
FT CDS 281. .1051
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:E7BNQ5"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ5"
FT /protein_id="ADO40579.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFWIVRDRRPTDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(629. .985)
FT /gene="AC5"
FT CDS complement(629. .985)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ6"
FT /protein_id="ADO40580.1"
FT /translation="MGTSHIKHQCILGVILVFSCLLLVVNNIIVNPDKLLNQRLFLRCI
FT LTTSNGCMPFPQHLVPIPMHVLNGGRTGLVIKHIKYFTKILWFICRSSITNNPKHHRIR
FT MVLGLDVLVHPYLT"
FT gene complement(1054. .1458)
FT /gene="AC3"
FT CDS complement(1054. .1458)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:E7BNQ7"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ7"
FT /protein_id="ADO40581.1"
FT /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISLNL
FT VIKAVEHVLYNVINQTMYVDQYSDIKLKLY"
FT gene complement(1151. .1603)
FT /gene="AC2"
FT CDS complement(1151. .1603)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /db_xref="GOA:E7BNQ8"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ8"
FT /protein_id="ADO40582.1"
FT /translation="MQHSSLSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT"
FT gene complement(1500. .2591)
FT /gene="AC1"
FT CDS complement(1500. .2591)
FT /codon_start=1
FT /gene="AC1"
FT /product="replicase"
FT /db_xref="GOA:E7BNQ9"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E7BNQ9"
FT /protein_id="ADO40583.1"
FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIR
FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM
FT EKDGDILDHGVFQVDGRSATGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH
FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVSLTQPL
FT YSGTNQSSTQGSEESAQEETSGP"
FT gene complement(2141. .2434)
FT /gene="AC4"
FT CDS complement(2141. .2434)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E7BNR0"
FT /protein_id="ADO40584.1"
FT /translation="MGILTCMFSSSSKESSSAETIDSSTSPPQLGQHISIRTFRELKAQ
FT AMSKPTWRKTETSLIMEFSKSMEDQLQEVAKLPTTHMPRQSTQGPKLRPSIY"
XX
SQ Sequence 2744 BP; 723 A; 529 C; 652 G; 840 T; 0 other;
gu112014 Length: 2744 20-MAY-2012 Type: N Check: 4022 ..
1 accggatggc cgcgcgattt ttttaactgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctcct tcgactataa gtacgtgcgc
101 actaagtttc aattcaaaaa atgtgggatc cactattaaa cgagttcccg
151 gatacggttc acggttttcg ttgtatgctt tctgtgaaat atttgcaact
201 tttgtcgcag gagtattcac cagatacgct tggttacgat ttaatacggg
251 atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagccctta caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
501 tacagtcgtt tgaatctcga cacgatgttg tccatattgg taaggtaatg
551 tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt ttggattgtt
701 cgtgatcgac gaccgacaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccca gtacggccac cgttaagaac atgcataggg
801 atcggtacca ggtgttgagg aaatggcatg caaccgttac tggtggtcaa
851 tatgcatcta aggaacaggc gttggttaag aagtttatca gggttaacaa
901 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg
951 agaatgcatt gatgctttat atggcttgta cccatgctag taacccagtt
1001 tatgctactc ttaagattcg gatatatttt tatgactctg taacgaattg
1051 aaattaataa agttttaatt ttatatctga atattggtct acatacattg
1101 tttgattaat tacattgtac aatacatgtt caacggcttt aataactaaa
1151 ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt
1201 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgcactccca gagctttccg aaggttgtag
1301 ttgaattgga tcctcattgt tatgatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ctgaggattt tgaaataaag gggatttgga acctcccaga
1401 taaagacgcc attcgttgaa tgagctgcag tgatgcgttc ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact
1501 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga
1551 actttgattg gtaccggagt agagcggttg ggtgagagag acgaatgttg
1601 cattctttaa agcccaggat tttaatgctg agttcttatc ctcgtctaag
1651 aactctttat agcttgcatt gggccctgga ttgcagagga agattgttgg
1701 tatgccgcct ttaatttgaa ctggcttccc gtattttgtg tttgattgcc
1751 agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga
1801 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg
1851 gctaaggtcc agatgcccgc ataaatagtt atgtgggcct aaagacctag
1901 cccacattgt ttttccagta cgactatctc cctcaattac tatactttga
1951 ggtctcaggg gccgcgcagc ggcatcgaca acgttctcgc acgcccactc
2001 ttcaagttct tctggaactt gatcaaatga agaagaagaa aaaggagaaa
2051 cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa
2101 ttatgaaatt gaagtagaaa gtctcttggg gctttctcct tcagtatatt
2151 gagggcctga gctttggacc ctgcgttgat tgcctcggca tatgcgtcgt
2201 tggcagtttg gcaacctcct gtagctgatc ttccatcgac ttggaaaact
2251 ccatgatcaa ggatgtctcc gtctttctcc atgtaggttt tgacatcgct
2301 tgagctttta gctccctgaa tgttcggatg gaaatgtgct gacctagttg
2351 gggaggtgag gtcgaagaat ctattgtttc tgcactggaa ctttccttcg
2401 aactggatga gaacatgcaa gtgaggattc ccatcttcat gaagttctct
2451 gcagattcta atgaattttt tgtttactgg ggtttggaga tttaagaatt
2501 gggaaagtgc ttcttcttta gtcagggagc acttgggata agtgagaaaa
2551 taatttttgg catttatttt aaaccgattg ggtgctgcca tgttgactta
2601 gtcaatcggt gtctctcaac tctctctatg tatcggtgta ttggagtcct
2651 atatatatgg agactctaat ggcataaatg taaataaaag aactttaatt
2701 tgaaattcaa aggaaaaggc taaagcggcc atccgtctaa tatt