Sequence of DPV Bhendi yellow vein mosaic virus
Bhendi yellow vein mosaic virus [India:Pandarahalli:OY167:2006] segment DNA-A, complete sequence.
ACC No: GU112079
Dated: 2012-05-20 | Length: 2740 | CRC: -248397018
ID GU112079; SV 1; circular; genomic DNA; STD; VRL; 2740 BP.
XX
AC GU112079;
XX
DT 02-JAN-2011 (Rel. 107, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE Bhendi yellow vein mosaic virus [India:Pandarahalli:OY167:2006] segment
DE DNA-A, complete sequence.
XX
KW .
XX
OS Bhendi yellow vein mosaic virus [India:Pandarahalli:OY167:2006]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2740
RX PUBMED; 22447131.
RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA Krishna Reddy M.;
RT "Molecular characterization of distinct bipartite begomovirus infecting
RT bhendi (Abelmoschus esculentus L.) in India";
RL Virus Genes 44(3):522-535(2012).
XX
RN [2]
RP 1-2740
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT "Molecular genetic diversity of begomoviruses infecting okra in India";
RL Unpublished.
XX
RN [3]
RP 1-2740
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT ;
RL Submitted (01-OCT-2009) to the INSDC.
RL Division of Plant Pathology, Indian Institute of Horticultural Research,
RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2740
FT /organism="Bhendi yellow vein mosaic virus
FT [India:Pandarahalli:OY167:2006]"
FT /segment="DNA-A"
FT /host="Abelmoschus esculentus (okra)"
FT /isolate="OY167"
FT /mol_type="genomic DNA"
FT /country="India:Pandarahalli, Tamil Nadu"
FT /isolation_source="leaf"
FT /collected_by="V.Venkataravanappa"
FT /collection_date="2006"
FT /db_xref="taxon:908100"
FT gene 121. .486
FT /gene="AV2"
FT CDS 121. .486
FT /codon_start=1
FT /gene="AV2"
FT /product="precoat protein"
FT /db_xref="GOA:E7BQ07"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:E7BQ07"
FT /protein_id="ADO41031.1"
FT /translation="MWDPLLNEFPDTIHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCSHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSKGM"
FT gene 281. .1051
FT /gene="AV1"
FT CDS 281. .1051
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:E7BQ08"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:E7BQ08"
FT /protein_id="ADO41032.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT gene complement(629. .985)
FT /gene="AC5"
FT CDS complement(629. .985)
FT /codon_start=1
FT /gene="AC5"
FT /product="AC5 protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="UniProtKB/TrEMBL:E7BQ09"
FT /protein_id="ADO41033.1"
FT /translation="MGTSHIKHQRILRMILVFSCLLLVVNNIIVNPNKFLNQRLFLTRI
FT LSTSNGCMPFPQHLVPIPMHVLHGRRTGLVIKHIKYFTKILWFICRSSITNKEKHHRIR
FT MVLGLDVLVHPYLT"
FT gene complement(1054. .1458)
FT /gene="AC3"
FT CDS complement(1054. .1458)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:E7BQ10"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:E7BQ10"
FT /protein_id="ADO41034.1"
FT /translation="MDSRTGARITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI
FT ITLRIHFNYNLRKALGIHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVVSINL
FT VIKAVEHVLYNVINQTMYVDQYSDIKFNLY"
FT gene complement(1151. .1603)
FT /gene="AC2"
FT CDS complement(1151. .1603)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcription activator protein"
FT /db_xref="GOA:E7BQ11"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:E7BQ11"
FT /protein_id="ADO41035.1"
FT /translation="MQHSSFSPNRCTRVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNTQDPFQLQP
FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCSFN"
FT gene complement(1500. .2591)
FT /gene="AC1"
FT CDS complement(1500. .2591)
FT /codon_start=1
FT /gene="AC1"
FT /product="replicase"
FT /db_xref="GOA:E7BQ12"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:E7BQ12"
FT /protein_id="ADO41036.1"
FT /translation="MAPPKKFQINAKNYFITYPTCSLTKEEALSQLQNLHTPTNKKFIK
FT ICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSVHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIRELAPKDYVLQFH
FT NLNANLDRIFTPPLEVYVSPFLSSSFDQVPEELEEWVSENVMDAAARPLRPLSLVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEEKNSALKAWALKNAAFVFLTEPL
FT YSGTNQSTAQGSEETHQEEESRS"
FT gene complement(2132. .2434)
FT /gene="AC4"
FT CDS complement(2132. .2434)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:E7BQ13"
FT /protein_id="ADO41037.1"
FT /translation="MGNLICTCSSSSRANTSARISDSSTWSPQAGQYISIRTFRELNQA
FT QMSSPTSTRTETPSNGESFRSMDDLQEGDSKQPTTLTQQHLTQAVSQRLLESLGS"
XX
SQ Sequence 2740 BP; 733 A; 543 C; 649 G; 815 T; 0 other;
gu112079 Length: 2740 20-MAY-2012 Type: N Check: 5763 ..
1 accggatggc ggcgcgattt ttttaagtgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctcct tcggctataa gtacttgcgc
101 actaagtttc aatttaaaaa atgtgggatc cactattaaa cgaatttccg
151 gatacgattc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
201 tttgtcgcag gattattctc cggatacgct tgggtacgag ttaatacggg
251 atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagcccata caccagccgt gctgctgctc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccaagggg atgtgagggt ccctgtaagg
501 tacaatcatt tgagtccaga catgatgttg tccatattgg taaggtgatg
551 tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtattggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
701 cgtgatcgac gaccgacaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccca gtacggcgac cgtgaagaac atgcataggg
801 atcggtacca ggtgttgagg aaatggcatg caaccgttac tggtggacaa
851 tatgcgagta aggaacaggc gttggttaag aaatttgtta gggttaacaa
901 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcatacgg
951 agaatgcgtt gatgctttat atggcttgta cccatgctag caacccagtt
1001 tatgctacgc tgaagatcag gatatatttt tatgactctg taacgaattg
1051 aaattaataa agattgaatt ttatatctga atattggtct acatacattg
1101 tttgattaat tacattgtac aaaacatgtt cgacagcttt aataactaaa
1151 ttaattgaaa ctacaccgag attgttgaga tatttgagga cttgggtttt
1201 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgtattccca gagctttccg taggttgtag
1301 ttgaaatgga tcctgagtgt tattatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ttgaggatct tgaaatagag gggatttgga accttccaga
1401 tatagacgcc attctttgct tgagctgcag tgatgcgtgc ccctgtgcga
1451 gaatccatgg ttgtggcagt tgatagagag ataataagaa cacccgcatt
1501 caagatctac tctcctcctc ctgatgcgtc tcttcgcttc cctgtgctgt
1551 actttgattg gtacccgagt acaacggttc ggtgagaaag acgaatgctg
1601 cattttttaa agcccacgct ttcaaagctg agttcttttc ctcgtccaag
1651 aattctttat agcttgcgtt ggggcctgga ttgcagagga agatagttgg
1701 aatgccgcct ttaatttgaa ctggcttccc gtacttggtg tttgattgcc
1751 agtccctttg ggcccccatg aattctttaa agtgtttcag ataatgcggg
1801 tcaacatcat ctataatgtt gaaccacgca tcgtttgaat acactttagg
1851 gcttagatct aggtgaccac ataaatagtt atgtgggcct aatgacctag
1901 cccacatcgt tttgcccgta cgactgtctc cctctaacac taaactcaaa
1951 ggacgcaaag gccgcgcagc ggcgtccatg acgttttccg atacccattc
2001 ctcaagttct tctggaactt gatcgaaaga agaagataaa aaaggagaaa
2051 cataaacctc caagggaggt gtaaaaatcc tatctaaatt ggcatttaaa
2101 ttatgaaatt gtaatacata atccttaggt gctaactccc taatgactct
2151 aagagcctct gacttactgc ctgcgttaag tgctgctgcg taagcgtcgt
2201 tggctgtttg ctgtccccct cttgcagatc gtccatcgat ctgaaactct
2251 ccccattcga gggtgtctcc gtccttgtcg atgtaggact tgacatctga
2301 gcttgattta gctccctgaa tgttcggatg gaaatgtact gacctgcttg
2351 gggagaccag gtcgaagaat cgctgattct ggcacttgta tttgccctcg
2401 aactggatga gcacgtgcag atgaggttcc ccattctcgt gaagctctct
2451 gcagatcttg atgaattttt tatttgttgg agtgtgtagg ttttgtaatt
2501 gggaaagtgc ctcctcttta gtaagagagc atgtgggata agtgatgaaa
2551 taatttttgg catttatctg aaattttttg ggaggagcca ttgacttggt
2601 caatcggtac ccagatctaa tcctatgtca attggggaac ggtaccctat
2651 atatagttgg gtaccaaatg gcaatatttg taattatgaa aggaaattca
2701 aaatcctcac gctccaaaaa gcggccatcc gtataatatt