Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus [India:Karnal:OY81A:2004] segment DNA-B, complete sequence.
ACC No: GU112083
Dated: 2012-05-20 | Length: 2695 | CRC: 1629998986
ID GU112083; SV 1; circular; genomic DNA; STD; VRL; 2695 BP.
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AC GU112083;
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DT 02-JAN-2011 (Rel. 107, Created)
DT 20-MAY-2012 (Rel. 112, Last updated, Version 2)
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DE Tomato leaf curl New Delhi virus [India:Karnal:OY81A:2004] segment DNA-B,
DE complete sequence.
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KW .
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OS Tomato leaf curl New Delhi virus [India:Karnal:OY81A:2004]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2695
RX PUBMED; 22447131.
RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S.,
RA Krishna Reddy M.;
RT "Molecular characterization of distinct bipartite begomovirus infecting
RT bhendi (Abelmoschus esculentus L.) in India";
RL Virus Genes 44(3):522-535(2012).
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RN [2]
RP 1-2695
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT "Molecular genetic diversity of begomoviruses infecting okra in India";
RL Unpublished.
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RN [3]
RP 1-2695
RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P.,
RA Jalali S., Krishnareddy M.;
RT ;
RL Submitted (09-OCT-2009) to the INSDC.
RL Division of Plant Pathology, Indian Institute of Horticultural Research,
RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India
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CC GenBank Accession Numbers GU112082-GU112083 represent the complete
CC genome of Tomato leaf curl New Delhi virus
CC [India:Karnal:OY81A:2004].
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FH Key Location/Qualifiers
FH
FT source 1. .2695
FT /organism="Tomato leaf curl New Delhi virus
FT [India:Karnal:OY81A:2004]"
FT /segment="DNA-B"
FT /host="Abelmoschus esculentus cultivar US7109 (okra)"
FT /isolate="OY81A"
FT /mol_type="genomic DNA"
FT /country="India:Karnal, Haryana"
FT /isolation_source="infected leaf"
FT /collected_by="M.Krishnareddy"
FT /collection_date="Apr-2004"
FT /db_xref="taxon:908119"
FT gene 442. .1248
FT /gene="BV1"
FT CDS 442. .1248
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /db_xref="GOA:E7BQ35"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:E7BQ35"
FT /protein_id="ADO41059.1"
FT /translation="MAFQTPYPTSRRSGYSFNRTYSGNRSFRLWKTRKQQNWKRYRNTH
FT PVSRSPTELFGDPISRQYTRKEICETQEGSEYVLHNNRYMTSYVTYPSKTRTGTNNRVR
FT SYIKLKSLNISGTFAVRTSDMMTEVVQTNGLYGVMSVVVVRDKSPKIYSATQPLIPFVE
FT LFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIRNCIPRTYTTWVTF
FT KDEEEDSCTGRYSNTLRNAIILYYVWLSDVSSQVDLYSNVILNYIG"
FT gene complement(1305. .2150)
FT /gene="BC1"
FT CDS complement(1305. .2150)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="GOA:E7BQ36"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:E7BQ36"
FT /protein_id="ADO41060.1"
FT /translation="MSIGNDGMGMGVGGYIQSERVEYALTNDATEVTLSSPSMFEQKIS
FT QLRNKCMKIDHVVLEYRNQVPINAVGHVVIEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSYFSLKDKNPWRVEYRVENANVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT TKEFTVNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGHS
FT SVISRPYKNLSGLDDSAIDPGPSASQAGSITREEIADIITKTVEKCIISNVTAPMSKDV
FT "
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SQ Sequence 2695 BP; 780 A; 584 C; 501 G; 830 T; 0 other;
gu112083 Length: 2695 20-MAY-2012 Type: N Check: 3110 ..
1 accgaaaggc cgcgaaaatt tttccccctc atcctgaccg ttgatgcgta
51 atcattgcac gcccttatct gcacgatttt gaacacgtgt attccactaa
101 cagactttat gcaaataaat gtcaaaaatg cgtgtctaca atgcgtatat
151 ggtccccata tgtcttgtcg tatttcttgg taatgcgcat atggtccccc
201 cgcactattt gaaattatca atacaagtta atttgcattt tctactctca
251 taattttgaa cggaccagat caaaattaat aagtccctaa aatggcggtc
301 gtccgattct cttttatata ctttaattca aacaatagtt gtttgaattg
351 tgtatactcc gtacgtcatt aatgttttat attgctacat atttgacact
401 actcggtgtt cttgtggcca tacacttctc atcggagtga aatggctttt
451 caaactcctt atcccacctc tcgtcgttct ggttactcat tcaatagaac
501 atacagtgga aacaggagtt tccgcttgtg gaagacccgg aagcagcaga
551 actggaagcg ctatcgcaat acacatcctg tctcacgttc tccaactgaa
601 ctgtttggcg atccaatctc cagacaatat acgcgtaagg aaatctgtga
651 aacacaggag ggatcggagt atgtcctcca caacaatcgt tacatgacgt
701 catatgtgac gtatccatca aaaacaagaa ctggaacgaa caaccgcgtt
751 cgttcttata tcaagctaaa gagtctcaac atatctggga catttgctgt
801 tcgcacatct gacatgatga ccgaagtggt gcaaacaaat gggctatacg
851 gagtgatgtc tgtagttgta gtccgcgata aatctccaaa gatttattct
901 gcgacccaac ccttaatacc gtttgttgag ctatttggat ctgttaatgc
951 ttgcagggga agtctgaaag tggcagaacg ccaccatgaa cgcttcgtac
1001 tgctgaatca aacatccatt gttgtcaaca ccccacattc taacgctatt
1051 aagaaattct gcattcgcaa ttgtatccca agaacttaca caacttgggt
1101 aacgttcaag gacgaagaag aagatagctg tactggacga tattcaaaca
1151 cccttagaaa tgcaattata ttatattatg tatggttaag cgatgtatcc
1201 tcacaagttg atctttatag caatgtaatt cttaattaca ttggataata
1251 tatgaaaatt cactacaaat atgtatttta ttaataaatt tggctgaaaa
1301 tttattacac gtcctttgac attggagcag ttacattaga tattatacat
1351 ttctctactg tcttcgtaat tatatcagca atttcttccc ttgtgatact
1401 ccccgcttgt gatgccgacg gacctggatc gattgccgaa tcgtccaatc
1451 cgctcaggtt tttgtatggt ctgctaatga cggacgaatg tccgatctcc
1501 gatctgcttg cccatgattc gttcggacct attgccaaat atggtacacg
1551 taacgatctt gaactatgtc ccattaaccg tgaaccatcc acaagacgcc
1601 ttgtttgtgg tttggaaccg acggaccaaa aatctatgtc atttactgtg
1651 aattcctttg tttgtatttc gatctttggt ggtcggaatt caacatcagt
1701 tgaatgtttt gccgacgaca gcttcaattt ccctagcatc ttacagaagt
1751 gcactccatt gacgacgttt gcgttctcca ctctgtattc aactctccaa
1801 ggattcttat ccttgagaga gaagtatgat gaagagtagt agtgcaggtt
1851 gcaattgcat ttgattggaa ttgtgaattc tgcttgtttt gtgtccccct
1901 ccgtcaatct catgtcgtgt atctctatta cgacatgacc aacagcatta
1951 attggaacct gattgcgata ttccaatacg acgtgatcta tcttcatgca
2001 tttattcctc aactggctaa ttttctgctc gaacatggac ggagatgaca
2051 aggtgacttc tgtagcatcg tttgtgagag cgtactcaac gcgctcagat
2101 tgaatatacc cacctactcc catacccata ccatcatttc ctattgacat
2151 attggccgcg cagcgcaaca cccactgaaa cacagaagga cagactacga
2201 tcaaagaaac cccaacggag aagaaaccct agcaaataac gaagttgttt
2251 ggtaaagaac gaaggtacat ggttttataa tcaatttgca tgtcatgtct
2301 atgtcatgcc acataacatc aaatgaacgg cacatatttc tctacgaaaa
2351 aggaaatgtg cctgcatatc acaatttact tagttcctgt atatatggga
2401 agcccaattt ttgttaattg ggctgcagta tagaaaaaag aagaagccca
2451 aaaaactggc ccaacatata ggtccattcc tcaaaatggc atcgcatgtg
2501 tgttattggg tgtatataat ttagagagaa gttggagttt ctctctctag
2551 aactcatctg gtgtctctca actttctcta tgtaattggt gtctggagtc
2601 ccatatatag ttaagacacc atatggcata attgtaattt tgaaaagaaa
2651 attactttat tctaaattcc ttaaagcggc ctttcgtata atatt