Sequence of DPV Pineapple bacilliform CO virus
Pineapple bacilliform comosus virus, complete genome.
ACC No: GU121676
Dated: 2010-11-02 | Length: 7543 | CRC: -1759464061
ID GU121676; SV 1; circular; genomic DNA; STD; VRL; 7543 BP.
XX
AC GU121676;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pineapple bacilliform comosus virus, complete genome.
XX
KW .
XX
OS Pineapple bacilliform comosus virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7543
RA Wu L.T., Li H.P.;
RT "Sequencing and analysis of the complete genome sequence of Pineapple
RT bacilliform comosus virus";
RL Unpublished.
XX
RN [2]
RP 1-7543
RA Wu L.T., Li H.P.;
RT ;
RL Submitted (20-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL College of Natural Resources, Lab. of Plant Virology, South China
RL Agricultural, GuangZhou, GuangDong 510642, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .7543
FT /organism="Pineapple bacilliform comosus virus"
FT /host="pineapple plants"
FT /mol_type="genomic DNA"
FT /country="China"
FT /db_xref="taxon:512088"
FT CDS 443. .970
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF1"
FT /protein_id="ADN88180.1"
FT /translation="MSQRYWEQKLEEYRNSHTQEVADLAYLNLEGAEKVTHKDLAHNLR
FT INTYRQDLANKILVGLSHKHAADIIREIHEDNRKLQNNLKACEKALKEQQAELTAVKSS
FT VPALREELRKIQQSWSEHRPLSKDDVEKLVLRISEQPKFIEQQTESLIKELTSKVSRVE
FT HLIHQLEGRILG"
FT CDS 967. .1338
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF2"
FT /protein_id="ADN88181.1"
FT /translation="MSLQEKRQNKAYKEALEETRNLWDTAVGFVDKSEIVANIGTITKQ
FT LNTVLYLLLDLSERISRLEKVAPPQTKDISKDLEKLQKQLSGLRISEEGGSNLKQKKVP
FT LRVFRNPFEILKGEISTSK"
FT CDS 1335. .7058
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF3"
FT /protein_id="ADN88182.1"
FT /translation="MMNTTPREVEQPLVEDQIWGYRWTQRACYEAQEAGRRLANIGRTI
FT LGMQPREHTLAMVIDPEAELQRSMSERARTVPAEVLYMTRRDNIHHRVYYFRCEERMRV
FT LDSDQQDRTFITPEAFEHLKEAGFEYIHLGILQVRFQILHRRYAGTMAFIAYRDTRWDN
FT RKSIIATMEVDLSEGNQIVYIIPDMMTTIRDCYEHIQISIRTIGYDDDWNGESNLLITR
FT GMTARLSNTPNVGFAYNISRVADYLKSKGVKAIDASKEKTTQFKGREWVLKPSQASVTP
FT IMPTIADAHERYDGSLGIKFGNYQEASTSGPPQYNEHDDEIVEDVVLAIIDDLPEDDEE
FT DYFQQILNDYQPDSQVALDYPVLIPTEDPFASSYAPLTPPALTPLPASGDNTPDGIRPV
FT LQRIVVGEKDFTDFNTLDFTLRGLDVELQTTDDFTAEEEELIGSFLNQLEEEENLYCKE
FT SPSCLFTDDNNGDDEGEHHVVAASLEYPELRKISEIINSTVVDSNPGNQYMIGDTDMDG
FT PPGYAPAQAQAAAVPPTYGGTSPSVRGPFRWKNPHEHFELPSAHQLSGAIFVMPQNFDP
FT KVFGRWESIVLNHLADRNFPTALDKIIYVENLLGEMEKITFQTWRMRYEEEFVSLQTRV
FT LGNNGTQNLLAQIRKVFFLEDPKGGTTVSQDAAYKAIKSLTCQEMSGQAIRKYMSSYFD
FT LAARSGRMWVNEELSDDFFTKLPMGLGDRVRQAFLSRYPGNTIGVPARITFTQQYLEEV
FT CREAAYQRSLKTLDFCKEFPIPNFYKGPQKKYGVRKSTTYRGKPHKSHIRIDKTKHLKN
FT RKCKCYICGEEGHFARDCKNPKKIVDRVHVLEELDIQDGMDVVSVGENEDELSDIYSVS
FT EGEESTHEAYHVFSLVEDCLIGKANTWRYQVRVSPKEYYCKHEWGFNSKILKNCRACGA
FT TAQTGERMDCPLCNMTICSSCSNYCFDITIPKNEERVQAIVSSSTASREESWKTIALEQ
FT RKLIKKLENEKEALIVELNQALEQLKQTKGKGIPEHQDDALEKELLKELLREEKEKAKK
FT AEESLQELLKEEKEKAKKAEESLQELLRKEKEKVRKAEESQKETALLVEKLQEQLQQAL
FT SNKTTCNEEVREEVAVITEEENLSYSAIKSPTRYNGLYNLKAKIEVEGETVVLNAILDT
FT GATACIIQEAKVPDRPCEQAAVSYTLHGVNSTTSGRKVLKGGKLWLGEQFFRLPRTLVA
FT DMVLTEGVEMIVGCNFLRSLEGGLRIEGEVVTFYKLVTNVQSCRSTHAFGAIIEELEMA
FT EDEYIDLNLMLATEPAVGEEFAKLPLYQQLKAEGFIGENPLLHWQRNQVICELQIKNPE
FT LTIEDRPLKHVTPALKEAMQKHVDKLLELKVIRPSTSRHRTTAMIVYSGTEVDPVTKKE
FT KRGKERLVFNYKRLNDNTEKDQYSLPGISTILQKIGHSKIYSKFDPKSGFHQVAMHPDS
FT VPWTAFWAINGLYEWLVMPFGLKNAPAVFQRKMDHCFRGTEDFIAVYIDDILVFSETPE
FT QHKKHLEIFLQIARKNGLVLSPTKMKVGVQQVDFLGATIGNSRIRLQPHIIQKVVQFDN
FT KDLQTTKGLRSFLGILNYARSYIPQMGKLLGPLYSKVSPTGEKRMNKQDWAIIEKIKQM
FT VEQLPELELPPNGSVIVIETDGCMEGWGGICKWKFPGAPRNQEKVCAYASGRFQPIKST
FT IDAEIQAVINSLDKFKIYYLNQKELVVRTDCQAIVSFYEKMANNKPSRVRWLTFSDFIT
FT GIGVPVKFEHIDGEDNLLADTLSRLVVMMLHEEAYTEPLQRILPLLSKKEAVHVLTHKP
FT ILKCGCGKTAIRKMSRTSRNPNRHYYCCEQEKCHCWWWEDHLLQFAAERGALEQEALRM
FT EELFDRLQFNTNEPHGGPLEDDDQASLLDAVGL"
XX
SQ Sequence 7543 BP; 2313 A; 1741 C; 1871 G; 1618 T; 0 other;
gu121676 Length: 7543 02-NOV-2010 Type: N Check: 6568 ..
1 tggtatcaga gccatgtttc tagcgtaaac accttcgggg gcccaaaggg
51 ggcctgacaa tggtgaagtt ttagataagg cgaacttcct tcttatcatc
101 atacttctgt gtagcaatct tattagctta aattgttttc cgagtaaata
151 agttcctcac tagcaaggga aaacctgatc tttgttaagg ggcaaaagag
201 caaaagaccg cagatagccc aagaggggct cagtcgggtg agcttgagtt
251 cctgaaacaa aaggaagggg gacactttct agcaggacta tttaacgagt
301 aaacaatcaa aggctcttga gaaagcgaag ggggttatat gagccagaag
351 gaaggtaagc cgtaataaaa caaaacctaa ggtcaccccc ggggcacccg
401 ttcgtctata agtgtgtttt ctagaaattt ggtattctgt ttatgtccca
451 gagatattgg gaacaaaaac tcgaagaata tcgcaactct catacccaag
501 aggttgcaga tctagcctac cttaaccttg aaggagctga gaaggtcacc
551 cacaaagacc ttgctcacaa cctacgcatc aacacctacc ggcaggatct
601 tgccaataag atcctcgtcg gactaagtca taaacacgcc gcggacatca
651 tccgcgaaat ccacgaagac aaccgcaagc tgcagaataa cctgaaggcc
701 tgtgaaaagg ctttgaagga gcagcaggcg gagctgactg ctgtaaaaag
751 cagcgtccca gctctccgtg aagaactccg caaaatacaa caaagctggt
801 cggagcaccg acctctgtcc aaagacgacg ttgagaaact cgtcttacgc
851 atcagtgaac aaccaaagtt cattgagcaa cagacggagt ccctcatcaa
901 ggagctaacc agcaaggtga gtcgggtgga acacctgatc caccagttgg
951 aaggacgcat ccttggatga gcctccagga gaaaaggcaa aacaaggcct
1001 acaaagaagc tttagaagaa accagaaatc tgtgggacac cgcagtcggt
1051 ttcgtcgata aaagcgagat tgtggccaac atcggcacaa taacaaaaca
1101 gctaaatacg gtcctctacc tgctcctcga tttgagcgag aggatctcca
1151 gactcgaaaa ggtagcacct ccccaaacaa aggacatttc caaagatctc
1201 gagaagctcc agaaacaact gtcagggctt cggatctctg aagaaggagg
1251 gtcgaacctt aagcaaaaga aggttcccct tcgcgtcttc agaaaccctt
1301 ttgagatctt aaagggggag atctccacca gtaaatgatg aacaccactc
1351 ctcgtgaagt ggaacagccc ctggtcgaag accagatatg gggctaccga
1401 tggacgcaac gagcctgtta tgaggctcag gaggcgggca ggcggctcgc
1451 caatattgga agaactattc tgggaatgca gccaagggag cataccctgg
1501 caatggtgat cgaccctgaa gcggagctgc aacgttcaat gagtgaacgt
1551 gccagaaccg tccctgccga agtcctctac atgacccggc gggataacat
1601 ccatcacagg gtctattact ttcgatgcga ggaaaggatg agggtcctgg
1651 acagtgacca gcaagatcgg accttcatca ctccggaagc tttcgagcat
1701 ctgaaggagg cgggattcga gtacatccat ctcggaatcc tgcaagtaag
1751 attccagatt ctacatcggc ggtacgccgg taccatggca ttcatcgcct
1801 acagagacac caggtgggat aacaggaaat ccattatcgc cactatggag
1851 gttgacctat ctgaaggcaa ccaaatagtc tacatcattc cggatatgat
1901 gactactatc cgggactgct atgagcacat tcaaatatca atccgaacca
1951 tcggatatga cgacgactgg aatggggagt ccaacctcct catcacaaga
2001 ggaatgacgg cccgactctc caacacacca aatgttgggt tcgcctacaa
2051 catctcccga gttgcggact acttaaagtc caaaggcgtt aaggcaattg
2101 acgcctcaaa agagaagacg acccagttta agggtcgcga atgggtactg
2151 aagcccagtc aagccagcgt cactccaatc atgcctacaa tagcggacgc
2201 tcacgaacgc tatgacggaa gtctaggcat caaatttggt aattatcagg
2251 aggccagtac aagcgggccc ccacaataca atgaacatga cgacgagatc
2301 gtagaagatg tagtcctggc aatcatcgac gacctgccag aagatgacga
2351 ggaggactat tttcaacaaa tattaaatga ttaccaacct gactcccagg
2401 ttgcgcttga ttacccagtc ctcattccaa cagaggatcc atttgcatcc
2451 tcttatgcac cactgacacc accggctctt acgccgctac cagcatccgg
2501 tgacaacacc cccgacggga tccgtcccgt cttgcagcga atcgtggtgg
2551 gggagaagga tttcaccgat ttcaacaccc ttgatttcac attgagaggg
2601 ttggatgtgg agttacaaac aacggatgac ttcactgcag aggaggaaga
2651 gctgatcggc tccttcctca accaactaga agaagaggag aacctttact
2701 gtaaggaatc tccttcatgt ctattcactg atgacaacaa cggcgatgac
2751 gaaggagaac atcatgtcgt tgccgcttct ctggaatacc cggagttgag
2801 aaagatatct gaaatcatca actccacggt agtagacagc aatccgggaa
2851 atcagtatat gataggagat actgatatgg atggaccacc cgggtatgca
2901 ccagcacaag cacaagctgc agcagtacca cctacatatg gcggtacatc
2951 tccatcagta agggggcctt tcaggtggaa gaacccccat gagcattttg
3001 agctaccatc agcacaccag ctgtccgggg caatctttgt catgccccaa
3051 aactttgatc caaaggtttt tgggcggtgg gaatccatcg ttctaaacca
3101 tctggcggac agaaacttcc caaccgcctt agacaagatc atctacgtgg
3151 agaacctcct aggggaaatg gagaaaatta cattccagac ctggaggatg
3201 agatacgaag aagaattcgt aagcctgcag acccgagtgc ttggcaacaa
3251 cggcactcag aacctgctcg ctcagatccg aaaggtattc ttcctggagg
3301 atcctaaagg aggaaccact gtttctcagg atgcggccta taaggccatc
3351 aagagcttga cgtgccaaga aatgtccggg caagcaatca ggaagtatat
3401 gtcttcctac tttgatctgg cggcacgatc aggaaggatg tgggtgaatg
3451 aggagctatc tgacgacttc ttcaccaagc tccccatggg tttaggcgac
3501 agagtgcgcc aagccttctt atcgaggtac cccggcaaca caataggggt
3551 tccagcaagg atcacattca cccagcaata cctggaagag gtctgtcggg
3601 aggcagccta tcaacgctcc ctaaagaccc tggacttctg caaggaattt
3651 ccaatcccga acttctacaa aggaccccaa aagaagtacg gagtaaggaa
3701 gtccaccacc tatcgcggca aacctcacaa gtcgcatatc aggattgaca
3751 agacgaagca cttgaagaac agaaaatgca agtgctacat ctgcggagaa
3801 gaaggacatt ttgcaaggga ttgcaaaaac ccgaagaaga tcgttgatcg
3851 ggttcatgtc ctagaagaac tagacatcca agacggaatg gatgtcgtct
3901 cggtcggaga gaatgaagat gagctctccg atatctactc cgtctctgaa
3951 ggagaggaat ccacacatga ggcataccac gtcttctccc ttgtggaaga
4001 ctgcctcatt ggaaaggcca acacctggag gtaccaggta cgagtttccc
4051 cgaaggaata ctattgtaaa cacgagtggg gattcaactc aaaaattcta
4101 aagaactgca gagcctgcgg ggcaacagct caaactggtg agcgtatgga
4151 ttgtcccctt tgtaatatga ctatctgctc ttcctgttcc aattactgct
4201 ttgacataac tatcccaaag aatgaggaaa gagtgcaggc gatagtatca
4251 tcctcaacag catcaaggga agaaagctgg aaaaccatcg ccttggagca
4301 gaggaagttg attaagaagc tggagaatga aaaggaggct ctcatagtag
4351 agctaaatca agcattggaa caactgaaac agacaaaggg aaaagggatt
4401 cccgagcatc aggatgatgc gctagaaaag gagctcctaa aagagcttct
4451 gagggaagag aaagagaagg caaagaaggc tgaggaaagc cttcaggaac
4501 ttctgaagga agagaaagag aaggcaaaga aggctgagga aagccttcag
4551 gaacttctga ggaaagaaaa ggaaaaagta aggaaggctg aagaaagcca
4601 gaaggagacg gcgctgttag tagaaaaact gcaagagcag ttacaacaag
4651 cgctaagcaa caagactacc tgcaacgaag aagtacgaga agaggtagct
4701 gtgataactg aggaggagaa tctcagttat agcgcaatca agtctccaac
4751 aaggtacaac ggcctgtaca atttaaaggc caaaattgaa gttgaaggag
4801 aaactgtagt tcttaacgcc atcctggaca ctggagctac ggcatgtatc
4851 atccaagaag cgaaggttcc tgatcggccg tgtgaacagg ctgcagtgag
4901 ttacaccctt cacggtgtca actcaaccac atcaggaagg aaagtattga
4951 aaggaggcaa gttatggctt ggagaacaat tcttcaggct tccaaggaca
5001 ctagtcgccg acatggtgct aacggaggga gtggagatga tcgtgggatg
5051 taacttccta cgaagtcttg aaggaggact cagaattgaa ggtgaggtag
5101 taacttttta taaattagtt actaatgtgc aatcatgcag aagtacacac
5151 gccttcggag ccatcataga ggagctcgag atggctgagg acgagtacat
5201 tgacctcaac ctcatgctag caacagaacc tgccgtagga gaagaatttg
5251 ccaaacttcc cctataccag caattgaagg ctgaaggatt cattggagaa
5301 aatccccttc tccactggca acgaaatcaa gtgatctgtg aactgcagat
5351 caaaaaccct gagttgacga tagaggaccg gcctctgaaa catgtcacgc
5401 cggctctaaa ggaagcaatg cagaagcacg ttgacaagct tctggaattg
5451 aaggtgatcc ggccttcaac gagtagacac cgaacaactg caatgatcgt
5501 ctactccgga acggaagtgg atcccgtaac caagaaggag aagagaggga
5551 aagagcgctt ggtgttcaac tataagcgcc tcaacgacaa tactgagaag
5601 gatcaatatt cactcccagg tatttctacg atccttcaga aaattggcca
5651 ctcaaaaatt tattcaaaat tcgaccccaa gagcgggttt catcaagtgg
5701 ctatgcaccc tgactccgtt ccatggaccg cattctgggc cattaacggc
5751 ctttatgaat ggttggtgat gccttttggg cttaaaaatg caccagcggt
5801 ctttcaaaga aaaatggatc attgctttag aggcacagaa gactttattg
5851 ctgtctacat agacgatatc ttagtcttct ctgagacccc tgagcagcac
5901 aaaaagcatc tggagatttt cctccagata gccaggaaga atgggcttgt
5951 gttaagccca acaaaaatga aagtgggagt tcagcaagtg gacttcctag
6001 gagctacaat tggaaattca cgcatccggc tccagcctca tattatccag
6051 aaggtcgttc aatttgacaa caaggacctt caaacaacaa aaggactccg
6101 aagcttcctc ggaatactga attacgcaag gagttatata cctcaaatgg
6151 ggaaattgct cggtcccctg tactcgaagg tttctccaac tggagaaaag
6201 aggatgaaca aacaagattg ggcgatcatt gaaaagatca agcaaatggt
6251 ggaacaattg cccgagttag agcttcctcc caacggttcg gtaatagtca
6301 tagagacgga tggatgtatg gaaggatggg gaggtatctg caagtggaaa
6351 ttcccaggcg ccccaaggaa tcaagaaaag gtgtgtgcct atgcaagcgg
6401 gcgatttcag ccaatcaaaa gtactatcga tgcagagatc caggcggtga
6451 tcaacagcct ggataaattc aaaatttatt atctgaatca gaaggagctc
6501 gttgtgcgaa cggactgcca ggcgatcgta tccttctacg agaaaatggc
6551 taacaacaag ccatcacggg taaggtggct aactttctct gactttatta
6601 caggcatagg agtccctgta aagtttgaac acatcgacgg cgaggataat
6651 ctattagcag acacattatc aaggttggta gtgatgatgc tgcatgaaga
6701 ggcgtatacg gaacctcttc aacgaatcct cccccttctg tcaaagaagg
6751 aggcagtaca cgtgctcacc cataagccga tactcaaatg tggttgcggg
6801 aaaacagcaa tcagaaaaat gtcccgcacc tcgaggaacc caaatcggca
6851 ctactactgc tgtgagcagg agaaatgcca ctgctggtgg tgggaggatc
6901 acctgctaca atttgctgct gagagaggag cgctagaaca agaagcgcta
6951 aggatggagg agcttttcga caggctccaa ttcaacacca acgaaccgca
7001 tggaggacca ctcgaagacg atgaccaggc ctccttactg gacgcggttg
7051 gcttatgaag cgggcgtggt aggcccataa tttattattt taaagacaat
7101 cgggcttttg gctctggttt tgggccttgg ccctggtttg taataatatt
7151 atttggccct ttatcactac caggacagct gttcctggaa aaactgtggc
7201 ccattacttt ttaaggcgcc cctggttttg tgcgcccatg gtttttgctt
7251 tctggtttag catcttgtaa agaagcggta ttatgtgctt tgaggacaag
7301 caaagtgacg atgaggcccc acgagtactc ggctttgctt accatcaacg
7351 caagaaagat accctttctg cctatataag gacttagttt agctcattgc
7401 taagcatcga agcagaactt cagttgctta ctttgagaga tattgtaaga
7451 gtttccatct atatataaaa tttctgagtg tttgctagtt tctttctgaa
7501 atcttttgag agtaggaaag cgatcaaagg gcgcgaaaaa tcc