Sequence of DPV Sweet potato chlorotic stunt virus
Sweet potato chlorotic stunt virus isolate BUSH86 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 protein (p7), and p22 protein (p22) genes, complete cds.
ACC No: GU127635
Dated: 2013-01-10 | Length: 1725 | CRC: -547788551
ID GU127635; SV 1; linear; genomic RNA; STD; VRL; 1725 BP.
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AC GU127635;
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DT 24-OCT-2011 (Rel. 110, Created)
DT 10-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Sweet potato chlorotic stunt virus isolate BUSH86 RNA-dependent RNA
DE polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE protein (p7), and p22 protein (p22) genes, complete cds.
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KW .
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OS Sweet potato chlorotic stunt virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Crinivirus.
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RN [1]
RP 1-1725
RA Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT "Natural wild hosts in Uganda, selection pressure, and synergistic
RT interactions with Sweet potato feathery mottle virus (genus Potyvirus) of
RT Sweet potato chlorotic stunt virus (genus Crinivirus)";
RL Unpublished.
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RN [2]
RP 1-1725
RA Tugume A.K., Amayo R., Mukasa S.B.;
RT ;
RL Submitted (23-OCT-2009) to the INSDC.
RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL FIN-00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1725
FT /organism="Sweet potato chlorotic stunt virus"
FT /host="Ipomoea tenuirostris"
FT /isolate="BUSH86"
FT /mol_type="genomic RNA"
FT /country="Uganda:Bushenyi"
FT /collection_date="08-Jun-2007"
FT /db_xref="taxon:81931"
FT gene <1. .54
FT /gene="RdRp"
FT CDS <1. .54
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="RNA replication"
FT /protein_id="ADQ42548.1"
FT /translation="NFSSFRKIFDEFFVVDI"
FT gene 71. .757
FT /gene="RNaseIII"
FT CDS 71. .757
FT /codon_start=1
FT /gene="RNaseIII"
FT /product="ribonuclease III"
FT /note="endonuclease; suppressor of RNA silencing"
FT /protein_id="ADQ42549.1"
FT /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW
FT AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEISRASDLISKKRAISKAVSFAV
FT EALNLS"
FT gene 762. .935
FT /gene="p7"
FT CDS 762. .935
FT /codon_start=1
FT /gene="p7"
FT /product="p7 protein"
FT /protein_id="ADQ42551.1"
FT /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSVIGFFTFNIILLFV
FT YCLLSIRIRRSY"
FT gene 1091. .1666
FT /gene="p22"
FT CDS 1091. .1666
FT /codon_start=1
FT /gene="p22"
FT /product="p22 protein"
FT /protein_id="ADQ42550.1"
FT /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN
FT KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS
FT HDFQHMKLCDIFRLSKDKLNSGVFTFLL"
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SQ Sequence 1725 BP; 461 A; 257 C; 361 G; 646 T; 0 other;
gu127635 Length: 1725 10-JAN-2013 Type: N Check: 9050 ..
1 aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat
51 ttgattttcg accgattatg atggttccga tttattccga cgtttccgag
101 gaaagcaagc ttactgtctt cggaagtcgt catagattgg attctattgt
151 acacagcatt tgtacttcag gtgatagaga cagatatgag attttaggtg
201 attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa
251 cataacgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc
301 taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt
351 tttatctttg gttgactccc gaccaaatgc agttgtgtag gaagactttc
401 gccggtggga gaagtttgta tgaggtcaat gttaaattct tagccaacta
451 ttttgagaga atcgttggtt ggttggttgt gcatgattgt tcagaaagtg
501 ttgagaagtt tcttgatctt ttcttgaaac ctcatatgtc tttccacatt
551 aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa
601 gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg
651 tcctagtcga cggacaagag atcagtcggg ctagtgattt gattagtaag
701 aagagagcaa tttcaaaagc ggtttctttc gctgttgaag ctctaaatct
751 gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa
801 tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg cactactttg
851 gtctgttatt ggatttttta cttttaatat tattttattg tttgtatatt
901 gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat
951 aagtggaata gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac
1001 aactcacaat ttaattgatt cagtccaacc tgcactagtt tgtggcgagg
1051 gtggttgttc gttcggtttt attatctatt tctttgaacg atgagttctg
1101 gagcaattta ctctgaactt aatcgttttc ttaagtatct tagggagtta
1151 gattttagta atttttgttt tagtgatttt ttgtttcgtt tttcttccct
1201 aaaatcacta atcgatgagt atagtagtca ttggttagta aatacgaatg
1251 aattagtctg gtatagaaca atctgtgagc aacgattgca tcctcatctt
1301 ttcgatgcaa acaggttgtt aacacggata aatgtttcag atttgaagca
1351 tgacttgata atgattcgtg atcatttttc gagtattgat gattttctaa
1401 acaagtatcc ggctatacca attcttgtct cattcaccaa aaatattagt
1451 gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc
1501 actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttacg
1551 ttaaccacca tcgtctttca gcgtcgtcgc atgattttca acatatgaag
1601 ttatgtgata tttttcgttt gtcgaaggat aagttgaaca gtggtgtgtt
1651 cactttcctt ctttaatgtt ttcttttagt atattaataa aaatcgataa
1701 agatattagg gtagatttga ttaat