Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Al-1-05 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: GU130078
Dated: 2010-11-02 | Length: 2411 | CRC: 156879236
ID GU130078; SV 1; linear; genomic RNA; STD; VRL; 2411 BP.
XX
AC GU130078;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate Al-1-05 RNA-dependent RNA polymerase (RdRp)
DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2411
RA Cordoba-Selles M.C.;
RT "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT causing necrosis in tomato";
RL Unpublished.
XX
RN [2]
RP 1-2411
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (22-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2411
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="Al-1-05"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2005"
FT /db_xref="taxon:112229"
FT gene <1. .472
FT /gene="RdRp"
FT CDS <1. .472
FT /codon_start=2
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ADP00413.1"
FT /translation="TECSIAYTATRYHLDSTIKQVYAGDDMALDGVVQEKPSFKKLQNK
FT LKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT DMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT gene 498. .1202
FT /gene="TGBp1"
FT CDS 498. .1202
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ADP00414.1"
FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT TYIERLRVPHYISFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT LTIGELNARSNS"
FT gene 1183. .1554
FT /gene="TGBp2"
FT CDS 1183. .1554
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ADP00415.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVFTNKFSFSFSRTTHQH
FT SCYNTHSATNNTQPLSGHH"
FT gene 1406. .1660
FT /gene="TGBp3"
FT CDS 1406. .1660
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ADP00416.1"
FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT gene 1698. .2411
FT /gene="CP"
FT CDS 1698. .2411
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ADP00417.1"
FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2411 BP; 732 A; 583 C; 438 G; 658 T; 0 other;
gu130078 Length: 2411 02-NOV-2010 Type: N Check: 4686 ..
1 cacagaatgt tcaatagcat atactgctac aagataccat cttgattcta
51 caatcaagca ggtttacgct ggagatgata tggcattaga tggagttgtc
101 caagaaaaac cctctttcaa aaaactacag aacaagctta aactcacctc
151 aaagacacta tttccaaaac aggttaaagg tgattatgct gaattctgtg
201 gttggacttt cactcctggt ggtatcatta aaaacccttt gaaaatgcat
251 gcctccatta tgttgcaaga ggcaataggc aatttacaca ctgctgccag
301 atcatatgcc attgacatga agcattcata ccaaatgggt gatgagcttc
351 acaattactt aacaccagat gaagctgaac aacacttcct tgctgttcgg
401 aagttgcaca agttacacca aggagaagca atgagacttg gtgaaaagag
451 ccctccaaaa gcaacacatt gaggggttaa gttttcccca gttcgaaatg
501 gaaagatcaa ctctgattaa tttacttcaa ttgcaccact tcgagccaaa
551 actcagtgtt gaaggaatca tagttgtgca cggaattgca ggcactggga
601 aaaccacttt acttaggact ttattttctg cttaccctag cttagttata
651 ggttcaccta ggccttgcta tttagataaa caaaacaaaa tttcacaagt
701 ttgcttatct tgctttccca atacccattg tgatattgtc gatgagtatc
751 atttgctaga aagttttcta gaaccaaaat tggctatctt tggtgacccc
801 tgtcaatgca catacattga gagacttaga gtcccacatt acatttcctt
851 cagaactcat agatttggaa agtcaactgc tgagattttg aacaaactgt
901 ttgaccttaa tatagtctca gttaagaaag aagacgacat cgttgaattc
951 tttaaccctt ttgaagttga ccccactgag catatctctg cctctgaaga
1001 agaagtcttg gactttgttt ctgaccaagt ggtgaccact agctcagagg
1051 aactagcagg acttgagttt gcagaaacaa ctttctactg cacaacattg
1101 gccgcagctg ttgctgaaaa tcctgctaag actttcatct ctctgactag
1151 acacacccac aaactcacca ttggggaact aaatgccagg tctaactcct
1201 agagctgacc tcactgacac atacaaaatc attgccattg ctttcttgtt
1251 gtcagcttgc atttacttcc aaaatagcca ctaccaacct gttgctggag
1301 acaatttaca ccgtttgcct tttggtggcc aatatcaaga cggcaccaaa
1351 aagatatctt attttccaca acagcagtca tactttcatt ctggaaacaa
1401 attaaatgtc ctcatactta tcttcattct cacattgggt attgtcttca
1451 ccaataaatt tagttttagc tttagtcgta ctactcacca gcattcttgc
1501 tataacacac attcagcaac caacaataca caaccattgt caggtcatca
1551 ttgacggtgc tgcaatagtc ataacaaatt gtgaaaacac accagaagtg
1601 cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctaaatt
1651 tgaaaattaa tattgagtgt tcacaaaatc aacttcaata aacaatcatg
1701 cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa
1751 agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc
1801 ctagcctcag tgatttgaag aaagtcaagt atgtctccac cgtgacctcc
1851 gtggccacac cagctgaaat tgaagcccta ggcaaaatct tcaccgctat
1901 gggccttgcc gccaatgaga ctggtccggc catgtgggat ctagctcgtg
1951 catatgctga tgtgcagagt tctaaatcgg cacagctgat tggagctacc
2001 ccttccaacc ctgcactatc acgccgagcc cttgctgctc agtttgatag
2051 aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt
2101 ggaacatact tctcgacagc aacattccac cagcaaattg ggccaaactt
2151 ggttaccaag aagatacaaa atttgctgca tttgacttct tcgatggagt
2201 caccaaccct gccagcctgc agcctgctga tggtcttatc aggcagccaa
2251 atgagaaaga actagctgct cactccgtag ctaagtacgg cgccttggct
2301 aggcaaaaga tctccacagg taattatatt accacacttg gagaagtcac
2351 acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacccc
2401 ctgaacttta a