Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Gr-05 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: GU130081
Dated: 2010-11-02 | Length: 2424 | CRC: -1044450272
ID GU130081; SV 1; linear; genomic RNA; STD; VRL; 2424 BP.
XX
AC GU130081;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate Gr-05 RNA-dependent RNA polymerase (RdRp) gene,
DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2424
RA Cordoba-Selles M.C.;
RT "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT causing necrosis in tomato";
RL Unpublished.
XX
RN [2]
RP 1-2424
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (22-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2424
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="Gr-05"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2005"
FT /db_xref="taxon:112229"
FT gene <1. .474
FT /gene="RdRp"
FT CDS <1. .474
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ADP00428.1"
FT /translation="NTECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQN
FT LLKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYA
FT IDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT gene 500. .1204
FT /gene="TGBp1"
FT CDS 500. .1204
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ADP00429.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 1185. .1556
FT /gene="TGBp2"
FT CDS 1185. .1556
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ADP00430.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 1408. .1656
FT /gene="TGBp3"
FT CDS 1408. .1656
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ADP00431.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1702. .2415
FT /gene="CP"
FT CDS 1702. .2415
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ADP00432.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKEIAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2424 BP; 735 A; 577 C; 443 G; 669 T; 0 other;
gu130081 Length: 2424 02-NOV-2010 Type: N Check: 6047 ..
1 aacactgagt gttcaattgc atacactgcc acaagattcc atattgacaa
51 tactgttaag caagtgtatg ccggtgacga catggcatta gatggagttg
101 tgagtgaaaa gaaatcattc aggaagttac aaaatttact aaaactcact
151 tcaaaaacgc tgtacccaaa acaggttaaa ggggattacg ctgaattttg
201 tggttggact ttcacaccag ggggtataat taaaaatcca cttaaaatgc
251 atgcctcaat tatgctgcaa gaggccattg gcaatctgca cacagcagcc
301 agatcttatg caattgacat gaagcattca taccaaatgg gtgaccaact
351 gcatgactac ctaacacccg atgaagctga acaacatttc ctagctgtga
401 gaaagcttca caaactccat caaggcgagg ccatgcgtct tggggagaaa
451 agtccaccaa gatcaaccca ttaaggggtt aagtttttcc cagtttgaaa
501 tggaaagatc aactttgatc aatttacttc tgttacacaa atttgaacac
551 aagattaaca ctgaaggaat cattgttgtg cacggaattg ctggaactgg
601 gaaaaccaca ttgcttagga ctttattttc tgcataccct agcctagtta
651 taggttcacc taggccttgt tacttagata aagctaataa aatttcacaa
701 gtttgccttt cttgttttcc aaataccttg tgtgacattg ttgacgagta
751 ccatctctta gaaagttttc ctgaaccaaa actagccatt tttggtgacc
801 cctgtcagtg cacttacatt gaaaggttga gaacacccaa ctacacatcc
851 ttcagaacac accgatttgg caaatccact gctgctctac taaacaagtt
901 atttgatctt aacattgagt cagtcaaagc acaagacgac acagtagaat
951 actttgatcc tttcgcagtg gacccctctg aacacatttc tgcttcagaa
1001 aaagaagttt tggaatttgt aggtgatcaa gttgagacta caagctctga
1051 agaactagct ggtctcgagt ttagtgaagt tactttctac tgtaccacac
1101 ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat ttcactcact
1151 agacacactt caaagctcac aattggtgaa ctaaatgcca ggtctgactc
1201 ctagagctga tcttactgac acgtataaaa tcattgctat agcctttcta
1251 ctgtcagctt gcatttactt ccaaaacagt cattatcaac cagttgcagg
1301 tgataacttg cacagactac cctttggtgg tcagtatcaa gacggaacta
1351 agaagatttc ttactttccg cagcaacaat cctactttca ctcaggaaac
1401 aagcttaatg tcctcatact tatcttcatt cttacactgg gtattgtcct
1451 caccaataaa tttagtttta gcattagccg taatactcac cagcatcatt
1501 gctacaacac acattctgca acccaaacag gtcaatcagt gccaggtcat
1551 cattgacggt gcagccatag ttataacaaa ttgtccaaac acacccgaag
1601 ttcttaaagc aatcaacttc tccccttgga acgggttaag ttttcctcaa
1651 ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat ttaactcaac
1701 tatggaaaac caacctacag cttctaaccc atcagatgta ccaccaactg
1751 ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca
1801 gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac
1851 ttcagttgcc acgcctgctg aaattgaggc ccttggcaag atctttattg
1901 ccatgggttt agcagccaat gagaccggac ctgccatgtg ggacctcgct
1951 cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc
2001 cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg
2051 atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt
2101 gtttggaaca tactgttaga cagcaatgtg ccacctgcca actgggcaaa
2151 attgggctat caggaagata ccaagtttgc tgcttttgac ttctttgatg
2201 gagtcacaaa tccagctagt ctacagcctg cagatggcct aatcaggcag
2251 cccaatgaaa aagagattgc tgctcactcg gttgctaaat atggtgccct
2301 tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag
2351 ttacacgtgg tcacatgggc ggcgccaaca ctatgtacgc aattgatgca
2401 cctcctgaac tttaaacact cgaa