Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Al-06 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: GU130087
Dated: 2010-11-02 | Length: 2409 | CRC: 1160603978
ID GU130087; SV 1; linear; genomic RNA; STD; VRL; 2409 BP.
XX
AC GU130087;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate Al-06 RNA-dependent RNA polymerase (RdRp) gene,
DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2409
RA Cordoba-Selles M.C.;
RT "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT causing necrosis in tomato";
RL Unpublished.
XX
RN [2]
RP 1-2409
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (24-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2409
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="Al-06"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2006"
FT /db_xref="taxon:112229"
FT gene <1. .460
FT /gene="RdRp"
FT CDS <1. .460
FT /codon_start=2
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ADP00458.1"
FT /translation="IAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLLKLT
FT SKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKH
FT SYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT gene 486. .1190
FT /gene="TGBp1"
FT CDS 486. .1190
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ADP00459.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 1171. .1542
FT /gene="TGBp2"
FT CDS 1171. .1542
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ADP00460.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 1394. .1642
FT /gene="TGBp3"
FT CDS 1394. .1642
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ADP00461.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1688. .2401
FT /gene="CP"
FT CDS 1688. .2401
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ADP00462.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAPSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2409 BP; 728 A; 580 C; 437 G; 664 T; 0 other;
gu130087 Length: 2409 02-NOV-2010 Type: N Check: 9077 ..
1 gattgcatac actgccacaa gattccatat tgacaatact atcaagcaag
51 tgtatgccgg tgacgacatg gcattagatg gagttgtgag tgaaaagaaa
101 tcattcagga agttacaaaa tctactaaaa ctcacttcaa aaacgctgta
151 cccaaaacag gttaaagggg attacgctga attttgtggt tggactttca
201 caccaggggg tataattaaa aatccactta aaatgcatgc ctcaattatg
251 ctgcaagaag ccattggcaa tctgcacaca gcagccagat cttatgcaat
301 tgacatgaag cattcatacc aaatgggtga ccaactgcat gactacctaa
351 cccccgatga agctgaacaa catttcctag ctgtgagaaa gcttcacaaa
401 ctccatcaag gcgaggccat gcgtcttggt gagaaaagtc caccaagatc
451 aacccattaa ggggttaagt tttccccagt ttgaaatgga aagatcaact
501 ttgatcaatt tacttctgtt acacaaattt gaacacaaga ttaacactga
551 aggaatcatt gttgtgcacg gaattgctgg aactgggaaa accacattgc
601 ttaggacttt attttctgca taccctagct tagttatagg ttcacctagg
651 ccttgttact tagataaagc taataaaatt tcacaagttt gcctttcttg
701 ttttccaaat accttgtgtg acattgttga cgagtaccat ctcttagaaa
751 gttttcctga accaaaacta gccatttttg gtgacccctg tcagtgcact
801 tacattgaaa ggttgagaac acccaactac acatccttca gaacacaccg
851 atttggcaaa tccactgctg ctctactaaa caagttattt gatcttaaca
901 ttgagtcagt caaagcacaa gatgacacag tagaatactt tgatcctttc
951 gcagtggacc cctctgaaca catttctgct tcagaaaaag aagttttgga
1001 atttgtaggt gatcaagttg agactacaag ctctgaagaa ctagctggtc
1051 tcgagtttag tgaagttact ttctactgta ccacacttgc tggtgctgtt
1101 caagaaaatc ctgccaaaac cttcatttca ctcactagac acacttcaaa
1151 actcacaatt ggtgaactaa atgccaggtc tgactcctag agctgatctt
1201 actgacacgt ataaaatcat tgctatagcc tttctactgt cagcttgcat
1251 ttacttccaa aacagtcatt atcaaccagt tgcaggtgat aatttgcaca
1301 gactaccctt tggtggtcag tatcaagacg gaactaagaa gatttcttac
1351 tttccgcagc aacaatccta ctttcactca ggaaacaagc ttaatgtcct
1401 catacttatc ttcattctta cactgggtat tgtcctcacc aataaattta
1451 gttttagcat tagccgtaat actcaccagc atcattgcta caacacacat
1501 tctgcaaccc aaacaggtca atcagtgcca ggtcatcatt gatggtgcag
1551 ccatagttat aacaaattgt ccaaacacac ccgaagttct taaagcaatc
1601 aacttctccc cttggaacgg gttaagtttt cctcaattgt gaaatcatat
1651 ttgttatcta gttaaattca aacaatttaa ctcaactatg gaaaaccaac
1701 ctacagcttc taacccatca gatgtaccac caactgctgc tcaagctggt
1751 gccccgagcc cagccgactt ctcaaatcct aatacagctc cttccctcag
1801 tgatttgaag aagatcaaat acgtgtcaac cgtcacttca gttgccacgc
1851 ctgctgaaat tgaggccctt ggcaagatct ttactgccat gggtttagca
1901 gccaatgaga ccggacctgc catgtgggac ctcgctcgtg cttatgctga
1951 tgtgcaaagt tcaaaatctg cacaacttat aggtgccaca ccatccaacc
2001 ccgctttgtc tagacgtgca cttgctgcac agtttgatcg tatcaatatc
2051 acacccagac aattctgcat gtattttgca aaaattgttt ggaacatact
2101 gttagacagc aatgtgccac ctgccaactg ggcaaaattg ggctatcagg
2151 aagataccaa gtttgctgct tttgacttct ttgatggagt cacaaatcca
2201 gctagtctac agcctgcaga tggcctaatc aggcagccca atgaaaaaga
2251 gcttgctgct cactcggttg ctaaatatgg tgcccttgcc cgccagaaaa
2301 tatccactgg taactacatc accacccttg gtgaagttac acgtggtcac
2351 atgggcggcg ccaacactat gtacgcaatt gatgcacctc ctgaacttta
2401 aacactcga