Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Al-1-07 RNA-dependent RNA polymerase (RdRp) gene, partial cds; triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete cds; and coat protein (CP) gene, partial cds.
ACC No: GU130088
Dated: 2010-11-02 | Length: 2374 | CRC: 1258276355
ID GU130088; SV 1; linear; genomic RNA; STD; VRL; 2374 BP.
XX
AC GU130088;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate Al-1-07 RNA-dependent RNA polymerase (RdRp)
DE gene, partial cds; triple gene block protein 1 (TGBp1), triple gene block
DE protein 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete
DE cds; and coat protein (CP) gene, partial cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2374
RA Cordoba-Selles M.C.;
RT "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT causing necrosis in tomato";
RL Unpublished.
XX
RN [2]
RP 1-2374
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (24-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2374
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="Al-1-07"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2007"
FT /db_xref="taxon:112229"
FT gene <1. .443
FT /gene="RdRp"
FT CDS <1. .443
FT /codon_start=3
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ADP00463.1"
FT /translation="RFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYP
FT KQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGD
FT QLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT gene 468. .1172
FT /gene="TGBp1"
FT CDS 468. .1172
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ADP00464.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 1153. .1524
FT /gene="TGBp2"
FT CDS 1153. .1524
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ADP00465.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 1376. .1624
FT /gene="TGBp3"
FT CDS 1376. .1624
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ADP00466.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1670. .>2374
FT /gene="CP"
FT CDS 1670. .>2374
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ADP00467.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAPSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPP"
XX
SQ Sequence 2374 BP; 715 A; 569 C; 433 G; 657 T; 0 other;
gu130088 Length: 2374 02-NOV-2010 Type: N Check: 4725 ..
1 caagattcca tattgacaat actatcaagc aagtgtatgc cggtgacgac
51 atggcattag atggagttgt gagtgaaaag aaatcattca ggaagttaca
101 aaatctacta aaactcactt caaaaacgct gtacccaaaa caggttaaag
151 gggattacgc tgaattttgt ggttggactt tcacaccagg gggtataatt
201 aaaaatccac ttaaaatgca tgcctcaatt atgctgcaag aagccattgg
251 caatctgcac acagcagcca gatcttatgc aattgacatg aagcattcat
301 accaaatggg tgaccaactg catgactacc taacccccga tgaagctgaa
351 caacatttcc tagctgtgag aaagcttcac aaactccatc aaggcgaggc
401 catgcgtctt ggtgagaaaa gtccaccaag atcaacccat taaggggtta
451 agttttccca gtttgaaatg gaaagatcaa ctttgatcaa tttacttctg
501 ttacacaaat ttgaacacaa gattaacact gaaggaatca ttgttgtgca
551 cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg
601 cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa
651 gctaataaaa tttcacaagt ttgcctttct tgttttccaa ataccttgtg
701 tgacattgtt gacgagtacc atctcttaga aagttttcct gaaccaaaac
751 tagccatttt tggcgacccc tgtcagtgca cttacattga aaggttgaga
801 acacccaact acacatcctt cagaacacac cgatttggca aatccactgc
851 tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagcac
901 aagatgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa
951 cacatttctg cttcagaaaa agaagttttg gaatttgtag gtgatcaagt
1001 tgagactaca agctctgaag aactagctgg tctcgagttt agtgaagtta
1051 ctttctactg taccacactt gctggtgctg ttcaagaaaa tcctgccaaa
1101 accttcattt cactcactag acacacttca aaactcacaa ttggtgaact
1151 aaatgccagg tctgactcct agagctgatc ttactgacac gtataaaatc
1201 attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca
1251 ttatcaacca gttgcaggtg ataatttgca cagactaccc tttggtggtc
1301 agtatcaaga cggaactaag aagatttctt actttccgca gcaacaatcc
1351 tactttcact caggaaacaa gcttaatgtc ctcatactta tcttcattct
1401 tacactgggt attgtcctca ccaataaatt tagttttagc attagccgta
1451 atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt
1501 caatcagtgc caggtcatca ttgatggtgc agccatagtt ataacaaatt
1551 gtccaaacac acccgaagtt cttaaagcaa tcaacttctc cccttggaac
1601 gggttaagtt ttcctcaatt gtgaaatcat atttgttatc tagttaaatt
1651 caaacaattt aactcaacta tggaaaacca acctacagct tctaacccat
1701 cagatgtacc accaactgct gctcaagctg gtgccccgag cccagccgac
1751 ttctcaaatc ctaatacagc tccttccctc agtgatttga agaagatcaa
1801 atacgtgtca accgtcactt cagttgccac gcctgctgaa attgaggccc
1851 ttggcaagat ctttactgcc atgggtttag cagccaatga gaccggacct
1901 gccatgtggg acctcgctcg tgcttatgct gatgtgcaaa gttcaaaatc
1951 tgcacaactt ataggtgcca caccatccaa ccctgctttg tctagacgtg
2001 cacttgctgc acagtttgat cgtatcaata tcacacccag acaattctgc
2051 atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc
2101 acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg
2151 cttttgactt ctttgatgga gtcacaaatc cagctagtct acagcctgca
2201 gatggcctaa tcaggcagcc caatgaaaaa gagcttgctg ctcactcggt
2251 tgctaaatat ggtgcccttg cccgccagaa aatatccact ggtaattaca
2301 tcaccaccct tggtgaagtt acacgtggtc acatgggcgg cgccaacact
2351 atgtacgcaa ttgatgcgcc tcct