Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate Mu-4-08 RNA-dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein (CP) genes, complete cds.
ACC No: GU130094
Dated: 2010-11-02 | Length: 2420 | CRC: -1186493498
ID GU130094; SV 1; linear; genomic RNA; STD; VRL; 2420 BP.
XX
AC GU130094;
XX
DT 02-NOV-2010 (Rel. 106, Created)
DT 02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate Mu-4-08 RNA-dependent RNA polymerase (RdRp)
DE gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE protein (CP) genes, complete cds.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-2420
RA Cordoba-Selles M.C.;
RT "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT causing necrosis in tomato";
RL Unpublished.
XX
RN [2]
RP 1-2420
RA Cordoba-Selles M.C.;
RT ;
RL Submitted (24-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .2420
FT /organism="Pepino mosaic virus"
FT /host="Solanum lycopersicum"
FT /isolate="Mu-4-08"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /collection_date="2008"
FT /db_xref="taxon:112229"
FT gene <1. .471
FT /gene="RdRp"
FT CDS <1. .471
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF1"
FT /protein_id="ADP00493.1"
FT /translation="TECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNL
FT LKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT DMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT gene 497. .1201
FT /gene="TGBp1"
FT CDS 497. .1201
FT /codon_start=1
FT /gene="TGBp1"
FT /product="triple gene block protein 1"
FT /note="ORF2"
FT /protein_id="ADP00494.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT TYIERLRTPNYISFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT gene 1182. .1553
FT /gene="TGBp2"
FT CDS 1182. .1553
FT /codon_start=1
FT /gene="TGBp2"
FT /product="triple gene block protein 2"
FT /note="ORF3"
FT /protein_id="ADP00495.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT gene 1405. .1653
FT /gene="TGBp3"
FT CDS 1405. .1653
FT /codon_start=1
FT /gene="TGBp3"
FT /product="triple gene block protein 3"
FT /note="ORF4"
FT /protein_id="ADP00496.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT gene 1699. .2412
FT /gene="CP"
FT CDS 1699. .2412
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="ORF5"
FT /protein_id="ADP00497.1"
FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 2420 BP; 728 A; 581 C; 444 G; 667 T; 0 other;
gu130094 Length: 2420 02-NOV-2010 Type: N Check: 6336 ..
1 actgagtgtt cgattgcata cactgccaca agattccata ttgacaatac
51 tgttaagcaa gtgtatgccg gtgacgacat ggcattagat ggagttgtga
101 gtgaaaagaa atcattcagg aagttacaaa atctactaaa actcacttca
151 aaaacgctgt acccaaaaca ggttaaaggg gattacgctg aattttgtgg
201 ttggactttc acaccagggg gtataattaa aaatccactt aaaatgcatg
251 cctcaattat gctgcaagag gccattggca atctgcacac agctgccaga
301 tcttatgcaa ttgacatgaa gcattcatac caaatgggtg accaactgca
351 tgactaccta acccccgatg aagctgaaca acatttccta gctgtgagaa
401 agcttcacaa actccatcaa ggcgaggcca tgcgtcttgg ggagaaaagt
451 ccaccaagat caacccatta aggggttaag tttttcccag tttgaaatgg
501 aaagatcaac tttgatcaat ttacttctgt tacacaaatt tgaacacaag
551 attaacactg aaggaatcat tgttgtgcac ggaattgctg gaactgggaa
601 aaccacattg cttaggactt tattttctgc ataccctagc ttagttatag
651 gttcacctag gccttgttac ttagataaag ctaataaaat ttcacaagtt
701 tgcctttctt gtttcccaaa taccttgtgt gacattgttg acgagtacca
751 tctcttagaa agttttcctg aaccaaaact agccattttt ggtgacccct
801 gtcagtgcac ttacattgaa aggttgagaa cacccaacta catatccttc
851 agaacacacc gatttggcaa atccactgct gctctactaa acaagttatt
901 tgatcttaac attgagtcag tcaaagcaca agacgacaca gtagaatact
951 ttgatccttt cgcagtggac ccctctgaac acatttctgc ttcagaaaaa
1001 gaagttttgg aatttgtagg tgatcaagtt gagactacaa gctctgaaga
1051 actagctggt ctcgagttta gtgaagttac cttctactgt accacacttg
1101 ctggtgctgt tcaagaaaat cctgccaaaa ccttcatttc actcactaga
1151 cacacttcaa agctcacaat cggtgaacta aatgccaggt ctgactccta
1201 gagctgatct tactgacacg tataaaatca ttgctatagc ctttctactg
1251 tcagcttgca tttacttcca aaacagtcat tatcaaccag ttgcaggtga
1301 taacttgcac agactaccct ttggtggtca gtatcaagac ggaactaaga
1351 agatttctta ctttccgcag caacaatcct actttcactc aggaaacaag
1401 cttaatgtcc tcatacttat cttcattctt acactgggta ttgtcctcac
1451 caataaattt agttttagca ttagccgtaa tactcaccag catcattgct
1501 acaacacaca ttctgcaacc caaacaggtc aatcagtgcc aggtcatcat
1551 tgacggtgca gccatagtta taacaaattg tccaaacaca cccgaagttc
1601 ttaaagcaat caacttctcc ccttggaacg ggttaagttt tcctcaattg
1651 tgaaatcata tttgttatct agttaaattc aaacaattta actcaactat
1701 ggaaaaccaa cctacagctt ctaacccatc agatgtacca ccaactgctg
1751 ctcaagctgg tgcccagagc ccagccgact tctcaaatcc taatacagct
1801 ccttccctaa gtgatttgaa gaagatcaaa tacgtgtcaa ctgtcacttc
1851 agttgccacg cctgctgaaa ttgaggccct tggcaagatc tttactgcca
1901 tgggtttagc agccaatgag accggacctg ccatgtggga cctcgctcgt
1951 gcttatgctg atgtgcaaag ttcaaaatct gcacaactta taggtgccac
2001 accatccaac cctgctttgt ctagacgtgc acttgctgca cagtttgatc
2051 gtatcaatat cacacccaga caattctgca tgtattttgc aaaaattgtt
2101 tggaacatac tgttagacag caatgtgcca cctgccaact gggcaaaatt
2151 gggctatcag gaagatacca agtttgctgc ttttgacttc tttgatggag
2201 tcacaaatcc agctagtcta cagcctgcag atggcctaat caggcagccc
2251 aatgaaaaag agcttgctgc tcactcggtt gctaaatatg gtgcccttgc
2301 ccgccagaaa atatccactg gtaactacat caccaccctt ggtgaagtta
2351 cacgtggtca catgggcggc gccaacacta tgtacgcaat tgatgcacct
2401 cctgaacttt aaacactcga