Sequence of DPV Potato virus A

Potato virus A isolate Sam-21-PVA polyprotein gene, partial cds.

ACC No: GU144313

Dated: 2010-09-07 | Length: 1022 | CRC: 1691890766

                
ID   GU144313; SV 1; linear; genomic RNA; STD; VRL; 1022 BP.
XX
AC   GU144313;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus A isolate Sam-21-PVA polyprotein gene, partial cds.
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KW   .
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OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1022
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
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RN   [2]
RP   1-1022
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1022
FT                   /organism="Potato virus A"
FT                   /host="potato, Kennebec cultivar"
FT                   /isolate="Sam-21-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Scotland"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .840
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYL3"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYL3"
FT                   /protein_id="ADA57713.1"
FT                   /translation="QSWYDMVYFQAGTLDAGETSAQKSEGRRKEGEGNSGKAVAVKDKD
FT                   VDLGTAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQN
FT                   WYDGVMASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDDEEQVSYPLKPMLDH
FT                   AKPSLRQIMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTP
FT                   VRAKEAHLQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .30
FT                   /product="NIb replicase"
FT   mat_peptide     31. .837
FT                   /product="coat protein"
XX
SQ   Sequence 1022 BP; 321 A; 194 C; 242 G; 261 T; 4 other;

gu144313 Length: 1022  07-SEP-2010  Type: N  Check: 6862  ..

       1  caaagctggt atgacatggt gtatttccaa gccggaactc ttgatgcagg
      51  tgaaacatca gcgcagaaat ctgaaggtag gaggaaagaa ggagaaggca
     101  acagtggcaa agctgttgcc gtgaaggaca aagatgtcga tttaggtact
     151  gctgggactc attcagtacc acgcttaaaa tcaatgacat caaaattgac
     201  actaccaatg ctcaaaggta agagtgtcgt taacctagat cacttgctat
     251  cttacaaacc aaagcaagta gacttgtcaa atgctagagc cactcacgaa
     301  caattccaaa actggtatga tggcgttatg gcaagttatg agttagagga
     351  atcaagcatg gagatcattc taaatggttt catggtatgg tgcattgaga
     401  atggaacttc tccagacatt aatggagttt ggaccatgat ggatgatgag
     451  gaacaagtgt catayccatt aaaacccatg cttgatcatg caaagccttc
     501  tttaaggcaa attatgagac atttcagcgc rctcgcagag gcgtacattg
     551  agatgagaag tcgtgagaaa ccatacatgc ccaggtatgg tcttcarcgc
     601  aacttgagag atcaaagttt ggcaaggtat gcwtttgatt tctatgagat
     651  cactgcaacc actccggtca gagccaagga ggcgcatttg caaatgaaag
     701  cagctgcgct gaagaattcg aacactaaca tgtttggact ggacggaaat
     751  gtcacaactt cggaagagga cacagaaagg cacacagcaa cggatgttaa
     801  tcgcaacatg catcaccttc tgggcgtgaa gggggtgtaa ccgaagtgcc
     851  gtactattat tatatataag agttcctgtt agtatccttg tcctattatt
     901  agaatacgtt tatctttcaa caagtataat attcgtgctc tcatctcgca
     951  atagtgagtt tgagtgggaa ataagtacta gtattctatg gccttacttg
    1001  ttatatagac ccaggtctgg gc