Sequence of DPV Potato virus A

Potato virus A isolate 147-PVA polyprotein gene, partial cds.

ACC No: GU144320

Dated: 2010-09-07 | Length: 997 | CRC: -529253247

                
ID   GU144320; SV 1; linear; genomic RNA; STD; VRL; 997 BP.
XX
AC   GU144320;
XX
DT   23-DEC-2009 (Rel. 103, Created)
DT   07-SEP-2010 (Rel. 106, Last updated, Version 2)
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DE   Potato virus A isolate 147-PVA polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus A
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-997
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   "Characterization of Viruses Infecting Potato Plants from a Single Location
RT   in Shetland, an Isolated Scottish Archipelago";
RL   J. Phytopathol. 158(9):633-640(2010).
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RN   [2]
RP   1-997
RA   Mortensen R.J., Shen X., Reid A., Mulholland V.;
RT   ;
RL   Submitted (29-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   Diagnostics and Molecular Biology Section, SASA (Science and Advice for
RL   Scottish Agriculture), Roddinglaw Road, Edinburgh, Midlothian EH12 9FJ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .997
FT                   /organism="Potato virus A"
FT                   /host="potato, Shetland Black cultivar"
FT                   /isolate="147-PVA"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:Shetland"
FT                   /collection_date="May-2008"
FT                   /db_xref="taxon:12215"
FT   CDS             <1. .828
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2JYM0"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:D2JYM0"
FT                   /protein_id="ADA57720.1"
FT                   /translation="DMVYFQAGTLDAGETPAQKTEGRKREGEGNSGKAVAVKDKDVDLG
FT                   TAGTHSVPRLKSMTSKLTLPMLKGKSVVNLDHLLSYKPKQVDLSNARATHEQFQNWYDG
FT                   VMASYELEESSMEIILNGFMVWCIENGTSPDINGVWTMMDGEEQISYPLKPMLDHAKPS
FT                   LRQVMRHFSALAEAYIEMRSREKPYMPRYGLQRNLRDQSLARYAFDFYEITATTPVRAK
FT                   EAHLQMKAAALKNSNTNMFGLDGNVTTSEEDTERHTATDVNRNMHHLLGVKGV"
FT   mat_peptide     <1. .18
FT                   /product="NIb replicase"
FT   mat_peptide     19. .825
FT                   /product="coat protein"
XX
SQ   Sequence 997 BP; 314 A; 194 C; 237 G; 252 T; 0 other;

gu144320 Length: 997  07-SEP-2010  Type: N  Check: 1734  ..

       1  gacatggtgt atttccaagc cggaactctt gatgcaggcg aaacaccagc
      51  gcagaaaact gaaggtagga agagagaagg agaaggcaac agtggcaaag
     101  ctgttgccgt gaaggacaaa gatgtcgatt taggtactgc tgggactcat
     151  tcagtaccac gcttaaaatc aatgacatca aaactgacac taccaatgct
     201  caaaggtaag agtgttgtta acctagatca cttgctatct tacaaaccaa
     251  agcaagtaga cttgtcaaat gctagagcca cccacgaaca attccaaaac
     301  tggtatgatg gcgttatggc aagttatgag ttagaggaat caagcatgga
     351  gatcattcta aatggtttca tggtatggtg cattgagaat ggaacttctc
     401  cagacattaa tggagtttgg actatgatgg atggcgaaga gcagatatca
     451  tacccactca aacccatgct tgatcatgca aagccttctt taaggcaagt
     501  tatgaggcat ttcagtgcgc tcgcagaggc gtatattgaa atgagaagtc
     551  gtgagaaacc atacatgccc aggtatggtc ttcaacgcaa tctgagagac
     601  caaagtttgg caaggtacgc ttttgatttc tatgagatca ctgctaccac
     651  tccggtcaga gccaaagagg cgcatctgca aatgaaagct gcagcgctga
     701  agaattcgaa caccaacatg tttggactgg acggaaatgt cacaacttcg
     751  gaagaggaca cagaaaggca cacagcaacg gatgttaatc gtaacatgca
     801  tcaccttctg ggcgtgaagg gggtgtaacc gaagtgccgt actattatta
     851  tatataagag ttcctgttag tatccttgtc ctattattag aatatgtttg
     901  tctttcaaca agtacgatgt tcgtgctctc atctcgcaac agtgagtttg
     951  agtgggaaat aagtattaat attctatggc cttacttgtt atataga