Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate Taigu polyprotein gene, partial cds.

ACC No: GU167976

Dated: 2009-11-30 | Length: 874 | CRC: 1322508754

                
ID   GU167976; SV 1; linear; genomic RNA; STD; VRL; 874 BP.
XX
AC   GU167976;
XX
DT   30-NOV-2009 (Rel. 103, Created)
DT   30-NOV-2009 (Rel. 103, Last updated, Version 1)
XX
DE   Turnip mosaic virus isolate Taigu polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-874
RA   Niu Y., Qing L., Yao M., Wang D., Liu J.;
RT   ;
RL   Submitted (31-OCT-2009) to the EMBL/GenBank/DDBJ databases.
RL   The College of Life Sciences, Shanxi Agricultural University, Taigu, Shanxi
RL   030801, P.R. China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .874
FT                   /organism="Turnip mosaic virus"
FT                   /host="Raphanus sativus L."
FT                   /isolate="Taigu"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collected_by="Yanbing Niu"
FT                   /collection_date="Jul-2008"
FT                   /identified_by="Ling Qing"
FT                   /PCR_primers="fwd_seq: gcagatgaaacgcttgacgcag, rev_seq:
FT                   tacaacttcataacccctgaacgc"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein; cp"
FT                   /protein_id="ACZ54251.1"
FT                   /translation="ADETLDAGLTDEQKQAEKERKEKERAEKERERQKQLALKKGKNAA
FT                   LEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLIPYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
XX
SQ   Sequence 874 BP; 289 A; 184 C; 230 G; 171 T; 0 other;

gu167976 Length: 874  30-NOV-2009  Type: N  Check: 8617  ..

       1  gcagatgaaa cgcttgacgc aggcctgaca gatgagcaga aacaggcaga
      51  aaaggagagg aaagagaaag agagagcaga gaaagagcgc gaaaggcaaa
     101  agcagttggc actcaagaaa ggcaaaaacg cagcattaga ggaaggcgaa
     151  cgcgacaacg aagtgaacgc cggaacctct ggaactttta gtgtgcctag
     201  gctcaaaagc ctaacgagca aaatgcgtgt gccaaagtac gagaaaagag
     251  tagccctcaa tctcgatcat ctgattccgt acacgccgga gcaaacggat
     301  ctatccaata cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  tgtcatggct gactacgagc taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc aaatataaac
     451  ggaatgtggg tgatgatgga cggtgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcggtacgca tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttcaggg gttatgaagt tgta