Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Israel strain Australia:Brisbane1:2006 segment DNA A, complete sequence.
ACC No: GU178813
Dated: 2010-07-02 | Length: 2769 | CRC: 138140060
ID GU178813; SV 1; circular; genomic DNA; STD; VRL; 2769 BP.
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AC GU178813;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Tomato yellow leaf curl virus - Israel strain Australia:Brisbane1:2006
DE segment DNA A, complete sequence.
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KW .
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OS Tomato yellow leaf curl virus - Israel
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2769
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT "Tomato yellow leaf curl virus in australia: distribution, detection and
RT discovery of naturally occurring defective DNA molecules";
RL Unpublished.
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RN [2]
RP 1-2769
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT ;
RL Submitted (05-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Horticulture and Forestry Science, Queensland Primary Industries and
RL Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane,
RL Queensland 4068, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .2769
FT /organism="Tomato yellow leaf curl virus - Israel"
FT /segment="DNA A"
FT /host="Solanum lycopersicum"
FT /strain="Australia:Brisbane1:2006"
FT /isolate="BRIP51987"
FT /mol_type="genomic DNA"
FT /country="Australia:Pallara, Brisbane, Queensland"
FT /collected_by="P. Lindsay"
FT /collection_date="13-Mar-2006"
FT /identified_by="J. E. Thomas"
FT /note="TYLCV-IL[AU:Bri1:06]"
FT /db_xref="taxon:66366"
FT gene 148. .498
FT /gene="V1"
FT CDS 148. .498
FT /codon_start=1
FT /gene="V1"
FT /product="capsid protein"
FT /note="CP"
FT /protein_id="ADI56592.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQAKIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="V2"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="V2"
FT /product="movement protein"
FT /note="MP"
FT /protein_id="ADI56591.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="C3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /protein_id="ADI56593.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="C2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /protein_id="ADI56594.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="C1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="C1"
FT /product="replication initiation protein"
FT /protein_id="ADI56595.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="C4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ADI56596.1"
FT /translation="MGNHISMCLSNSKANTNVKTNGSSTWYPQTGQHISIRTFRQLKAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
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SQ Sequence 2769 BP; 751 A; 527 C; 612 G; 879 T; 0 other;
gu178813 Length: 2769 02-JUL-2010 Type: N Check: 6654 ..
1 accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttccac
51 agacgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtcctcaa gtagtttgtc ttgcactatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt ggaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgaagatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatattaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
751 aaacagccca atggatttcg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aaccgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattgtta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa acatttgtga
1301 atccccaata ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg gctgtgttct gttatcttga
1401 aatagagggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaaggttg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacgca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc ttcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgccatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctttta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggtttt tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcaa agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaaaaat caaaaatcaa atcattaaag
2751 cggccatccg tataatatt