Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Israel strain Australia:Brisbane3:2006 segment DNA A, complete sequence.
ACC No: GU178815
Dated: 2010-07-02 | Length: 2780 | CRC: 826985464
ID GU178815; SV 1; circular; genomic DNA; STD; VRL; 2780 BP.
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AC GU178815;
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DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
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DE Tomato yellow leaf curl virus - Israel strain Australia:Brisbane3:2006
DE segment DNA A, complete sequence.
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KW .
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OS Tomato yellow leaf curl virus - Israel
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2780
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT "Tomato yellow leaf curl virus in australia: distribution, detection and
RT discovery of naturally occurring defective DNA molecules";
RL Unpublished.
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RN [2]
RP 1-2780
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT ;
RL Submitted (05-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Horticulture and Forestry Science, Queensland Primary Industries and
RL Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane,
RL Queensland 4068, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="Tomato yellow leaf curl virus - Israel"
FT /segment="DNA A"
FT /host="Solanum lycopersicum cv. Temptation"
FT /strain="Australia:Brisbane3:2006"
FT /isolate="BRIP49032"
FT /mol_type="genomic DNA"
FT /country="Australia:Corinda, Brisbane, Queensland"
FT /collected_by="R. M. Osterfield"
FT /collection_date="16-Mar-2006"
FT /identified_by="A. D. W. Geering"
FT /note="TYLCV-IL[AU:Bri3:06]"
FT /db_xref="taxon:66366"
FT gene 147. .497
FT /gene="V1"
FT CDS 147. .497
FT /codon_start=1
FT /gene="V1"
FT /product="capsid protein"
FT /note="CP"
FT /protein_id="ADI56604.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 307. .1083
FT /gene="V2"
FT CDS 307. .1083
FT /codon_start=1
FT /gene="V2"
FT /product="movement protein"
FT /note="MP"
FT /protein_id="ADI56603.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1080. .1484)
FT /gene="C3"
FT CDS complement(1080. .1484)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /protein_id="ADI56605.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNNNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1225. .1632)
FT /gene="C2"
FT CDS complement(1225. .1632)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /protein_id="ADI56606.1"
FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQQQ
FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1541. .2614)
FT /gene="C1"
FT CDS complement(1541. .2614)
FT /codon_start=1
FT /gene="C1"
FT /product="replication initiation protein"
FT /protein_id="ADI56607.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPVEVYFSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2170. .2463)
FT /gene="C4"
FT CDS complement(2170. .2463)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ADI56608.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
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SQ Sequence 2780 BP; 755 A; 531 C; 610 G; 884 T; 0 other;
gu178815 Length: 2780 02-JUL-2010 Type: N Check: 2590 ..
1 accggatggc cgcgcctttt cctttatgtg gtccccacga gggttccaca
51 gacgtcactg tcaaccaatc aaattgcatc ctcaaacgtt agataagtgt
101 tcatttgtct ttatatactt ggtcctcaag tagtttgtct tgcactatgt
151 gggatccact tctaaatgaa tttcctgaat ctgttcacgg atttcgttgt
201 atgttagcta ttaaatattt gcagtccgtt gaggaaactt acgagcccaa
251 tacattgggc cacgatttaa ttagggatct tatatctgtt gtaagggccc
301 gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgtctc
351 gaaggttcgc cgaaggctga acttcgacag cccatacagc agccgtgctg
401 ctgtccccat tgtccaaggc acaaacaagc gacgatcatg gacgtacagg
451 cccatgtacc ggaagcccag aatatacaga atgtatcgaa gccctgatgt
501 tcctcgtgga tgtgaaggcc catgtaaagt ccagtcttat gagcaacggg
551 atgatattaa gcatactggt attgttcgtt gtgttagtga tgttactcgt
601 ggatctggaa ttactcacag agtgggtaag aggttctgtg ttaaatcgat
651 atatttttta ggtaaagtct ggatggatga aaatattaag aagcagaatc
701 acactaatca ggtcatgttc ttcttggttc gtgatagaag gccctatgga
751 aacagcccaa tggattttgg acaggttttt aatatgttcg ataatgagcc
801 cagtaccgca accgtgaaga atgatttgcg ggataggttt caagtgatga
851 ggaaatttca tgctacagtt attggtgggc cctctggaat gaaggaacag
901 gcattagtta agagattttt tagaattaac agtcatgtaa cttataatca
951 tcaggaggca gccaagtatg agaaccatac tgaaaacgcc ttgttattgt
1001 atatggcatg tacgcatgcc tctaatccag tgtatgcaac tatgaaaata
1051 cgcatctatt tctatgattc aatatcaaat taataaaatt tatattttat
1101 atcatgagtt tctgttacat ttattgtgtt ttcaagtaca tcatacaata
1151 catgatcaac tgctctgatt acattgttaa ttgaaattac accaagacta
1201 tctaaatact taagaacttg atatctaaat actcttaaga aacgaccagt
1251 ctgaggctgt aatgtcgtcc aaattcggaa gttgagaaaa catttgtgaa
1301 tccccaatac cttcctgatg ttgttgttga atcttatctg aatggaaatg
1351 atgtcgtggt tcattagaaa tggcctctgg ctgtgttctg ttatcttgaa
1401 atagagggga ttgtttatct cccagataaa aacgccattc tctgcttgag
1451 gagcagtgat gagttcccct gtgcgtgaat ccatgattgt tgcagttgat
1501 gtggaggtag tatgagcagc cacagtctag gtctacacgc ttacgcctta
1551 ttggtttctt cttggctatc ttgtgttgga ccttgattga tacttgcgaa
1601 cagtggctcg tagagggtga cgaaggttgc attcttgaga gcccaatttt
1651 tcaaggatat gtttttttct tcgtctagat attccctata tgaggaggta
1701 ggtcctggat tgcagaggaa gatagtggga attccccctt taatttgaat
1751 gggcttcccg tactttgtgt tgctttgcca gtccctctgg gcccccatga
1801 attccttgaa gtgctttaaa taatgcgggt ctacgtcatc aatgacgttg
1851 taccacgcat cattactgta cacctttggg cttaggtcta gatgtccaca
1901 taaataatta tgtgggccta gagacctggc ccacattgtt ttgcctgttc
1951 tgctatcacc ctcaatgaca atacttatgg gtctccatgg ccgcgcagcg
2001 gaagatacga cgttctcggc gacccactct tcaagttcat ctggaacttg
2051 attaaaagaa gaagaaagaa atggagaaaa ataaacttct acaggaggac
2101 taaaaatcct atctaaattt gaacttaaat tatgaaattg taaaatatag
2151 tcctttgggg ccttctcttt taatatattg agggcctcgg atttactgcc
2201 tgaattgagt gcctcggcat atgcgtcgtt ggcagattgc tgacctcctc
2251 tagctgatct gccatcgatt tggaaaactc caaaatcaat gaagtctccg
2301 tctttctcca cgtaggtctt gacatctgtt gagctcttag ctgcctgaat
2351 gttcggatgg aaatgtgctg acctgtttgg ggataccagg tcgaagaacc
2401 gttggttctt acattggtat ttgccttcga attggataag cacatggaga
2451 tgtggttccc cattctcgtg gagttctctg caaactttga tgtatttttt
2501 atttgttggg gtttctaggt tttttaattg ggaaagtgct tcctctttag
2551 agagagaaca attgggatat gttaggaaat aatttttggc atatatttta
2601 aataaacgag gcatgttgaa atgaattggt gtccctcaaa gctctatggc
2651 aatcggtgta tcggtgtctt acttatacct ggacacctaa tggctatttg
2701 gtaattttgt aaaagtacat tgcaattcaa aattcaaaat tcaaaaatca
2751 aatcattaaa gcggccatcc gtataatatt