Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg2:2006 segment DNA A, complete sequence.
ACC No: GU178819
Dated: 2010-07-02 | Length: 2781 | CRC: 360604117
ID GU178819; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC GU178819;
XX
DT 02-JUL-2010 (Rel. 105, Created)
DT 02-JUL-2010 (Rel. 105, Last updated, Version 1)
XX
DE Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg2:2006
DE segment DNA A, complete sequence.
XX
KW .
XX
OS Tomato yellow leaf curl virus - Israel
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT "Tomato yellow leaf curl virus in australia: distribution, detection and
RT discovery of naturally occurring defective DNA molecules";
RL Unpublished.
XX
RN [2]
RP 1-2781
RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W.,
RA Thomas J.E.;
RT ;
RL Submitted (05-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Horticulture and Forestry Science, Queensland Primary Industries and
RL Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane,
RL Queensland 4068, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .2781
FT /organism="Tomato yellow leaf curl virus - Israel"
FT /segment="DNA A"
FT /host="Solanum lycopersicum cv. Cherry"
FT /strain="Australia:Bundaberg2:2006"
FT /isolate="BRIP49053"
FT /mol_type="genomic DNA"
FT /country="Australia:Bundaberg, Queensland"
FT /collected_by="D. M. Persley"
FT /collection_date="11-Apr-2006"
FT /identified_by="D. M. Persley"
FT /note="TYLCV-IL[AU:Bun2:06]"
FT /db_xref="taxon:66366"
FT gene 148. .498
FT /gene="V1"
FT CDS 148. .498
FT /codon_start=1
FT /gene="V1"
FT /product="capsid protein"
FT /note="CP"
FT /protein_id="ADI56628.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PEAQNIQNVSKP"
FT gene 308. .1084
FT /gene="V2"
FT CDS 308. .1084
FT /codon_start=1
FT /gene="V2"
FT /product="movement protein"
FT /note="MP"
FT /protein_id="ADI56627.1"
FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081. .1485)
FT /gene="C3"
FT CDS complement(1081. .1485)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /note="Ren"
FT /protein_id="ADI56629.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPFYFKITEHRQRPFLMNHDI
FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISIKN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226. .1633)
FT /gene="C2"
FT CDS complement(1226. .1633)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /note="TrAP"
FT /protein_id="ADI56630.1"
FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSLLFQDNRTQTEAISNEPRHHFHSDKIQPQ
FT HQEGIGDSQMLSQLPNLDDITASDWSFLKSI"
FT gene complement(1542. .2615)
FT /gene="C1"
FT CDS complement(1542. .2615)
FT /codon_start=1
FT /gene="C1"
FT /product="replication initiation protein"
FT /protein_id="ADI56631.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC
FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA
FT SINQGPTQDSQEETNKA"
FT gene complement(2171. .2464)
FT /gene="C4"
FT CDS complement(2171. .2464)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="ADI56632.1"
FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ
FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY"
XX
SQ Sequence 2781 BP; 757 A; 530 C; 610 G; 884 T; 0 other;
gu178819 Length: 2781 02-JUL-2010 Type: N Check: 4134 ..
1 accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac
51 agatgtcact gtcaaccaat caaattgcat cctcaaacgt tagataagtg
101 ttcatttgtc tttatatact tggtccccaa gtagtctgtc ttgcaatatg
151 tgggatccac ttctaaatga atttcctgaa tctgttcacg gatttcgttg
201 tatgttagct attaaatatt tgcagtccgt tgaggaaact tacgagccca
251 atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc
301 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct
351 cgaaggttcg ccgaaggctg aacttcgaca gcccatacag cagccgtgct
401 gctgtcccca ttgtccaagg cacaaacaag cgacgatcat ggacgtacag
451 gcccatgtac cggaagccca gaatatacag aatgtatcga agccctgatg
501 ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta tgagcaacgg
551 gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg
601 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga
651 tatatttttt aggtaaagtc tggatggatg aaaatatcaa gaagcagaat
701 cacactaatc aggtcatgtt cttcttggtt cgtgatagaa ggccctatgg
751 aaacagccca atggattttg gacaggtttt taatatgttc gataatgagc
801 ccagtaccgc aactgtgaag aatgatttgc gggataggtt tcaagtgatg
851 aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca
901 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc
951 atcaggaggc agccaagtat gagaaccata ctgaaaacgc cttgttattg
1001 tatatggcat gtacgcatgc ctctaatcca gtgtatgcaa ctatgaaaat
1051 acgcatctat ttctatgatt caatatcaaa ttaataaaat ttatatttta
1101 tatcatgagt ttctgttaca tttattgtgt tttcaagtac atcatacaat
1151 acatgatcaa ctgctctgat tacattttta attgaaatta caccaagact
1201 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag
1251 tctgaggctg taatgtcgtc caaattcgga agttgagaaa gcatttgtga
1301 atccccaatg ccttcctgat gttgtggttg aatcttatct gaatggaaat
1351 gatgtcgtgg ttcattagaa atggcctctg tctgtgttct gttatcttga
1401 aatagaaggg attgtttatc tcccagataa aaacgccatt ctctgcttga
1451 ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga
1501 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt
1551 attggtttct tcttggctat cttgtgttgg accttgattg atacttgcga
1601 acagtggctc gtagagggtg acgaagattg cattcttgag agcccaattt
1651 ttcaaggata tgtttttttc ttcgtctaga tattccctat atgaggaggt
1701 aggtcctgga ttgcagagga agatagtggg aattccccct ttaatttgaa
1751 tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg
1801 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt
1851 gtaccacaca tcattactgt acacctttgg gcttaggtct agatgtccac
1901 ataaataatt atgtgggcct agagacctgg cccacattgt tttgcctgtt
1951 ctgctatcac cctcaatgac aatacttatg ggtctccatg gccgcgcagc
2001 ggaagatacg acgttctcgg cgacccactc gtcaagttca tctggaactt
2051 gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga
2101 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata
2151 gtcctttggg gccttctctt ttaatatatt gagggcctcg gatttactgc
2201 ctgaattgag tgcctcggca tatgcgtcgt tggcagattg ctgacctcct
2251 ctagctgatc tgctatcgat ttggaaaact ccaaaatcaa tgaagtctcc
2301 gtctttctcc acgtaggtct tgacatctgt tgagctctta gctgcctgaa
2351 tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac
2401 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag
2451 atgtggttcc ccattctcgt ggagttctct gcaaactttg atgtattttt
2501 tatttgttgg ggtttctagg ttttttaatt gggaaagtgc ttcctcttta
2551 gagagagaac aattgggata tgttaggaaa taatttttgg catatatttt
2601 aaataaacga ggcatgttga aatgaattgg tgtccctcag agctctatgg
2651 caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt
2701 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc
2751 aaatcaataa agcggccatc cgtataatat t