Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate CHN-HN1 multifunctional protein and RNA-dependent RNA polymerase genes, partial cds; capsid protein and movement protein genes, complete cds; and putative aphid transmission factor gene, partial cds.
ACC No: GU190164
Dated: 2012-11-09 | Length: 2915 | CRC: -1018179232
ID GU190164; SV 1; linear; genomic RNA; STD; VRL; 2915 BP.
XX
AC GU190164;
XX
DT 16-DEC-2009 (Rel. 103, Created)
DT 09-NOV-2012 (Rel. 114, Last updated, Version 4)
XX
DE Sugarcane yellow leaf virus isolate CHN-HN1 multifunctional protein and
DE RNA-dependent RNA polymerase genes, partial cds; capsid protein and
DE movement protein genes, complete cds; and putative aphid transmission
DE factor gene, partial cds.
XX
KW .
XX
OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
XX
RN [1]
RP 1-2915
RX DOI; 10.1007/s11262-012-0774-1.
RX PUBMED; 22752564.
RA Gao S.J., Lin Y.H., Pan Y.B., Damaj M.B., Wang Q.N., Mirkov T.E.,
RA Chen R.K.;
RT "Molecular characterization and phylogenetic analysis of Sugarcane yellow
RT leaf virus isolates from China";
RL Virus Genes 45(2):340-349(2012).
XX
RN [2]
RP 1-2915
RA Gao S.J., Wang Q.N., Chen R.K., Huang X.D., Guo J.L.;
RT ;
RL Submitted (11-NOV-2009) to the INSDC.
RL Key Laboratory of Sugarcane Genetic Improvement, Ministry of Agriculture,
RL Fuzhou, Fujian 350002, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .2915
FT /organism="Sugarcane yellow leaf virus"
FT /host="sugarcane cv. YC98-2"
FT /isolate="CHN-HN1"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Dec-2007"
FT /db_xref="taxon:94290"
FT CDS <1. .667
FT /codon_start=2
FT /product="multifunctional protein"
FT /note="ORF1"
FT /protein_id="ACZ73859.1"
FT /translation="DYAEEVYEKTLAEPKVWKPASGKYWWEMAEEEDDFVVEAKLPPPD
FT KPVENATAKEQTPAPTVEKAMVADQPTPDQGNEPSGADHLKTPESTPLKQDESTKELLN
FT NIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKLPRKHKTSNTSSKPHTNGKSP
FT PVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSPVSGGPPSAPKPKRQV"
FT CDS <208. .1926
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2; produced by predicted -1 translational
FT frameshift of ORF1"
FT /protein_id="ACZ73860.1"
FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD
FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC
FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR
FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVDSLELDA
FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVNFQEMTPEQLVREGLCDP
FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG
FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDMEVRNL
FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA
FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN
FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK"
FT CDS 2121. .>2915
FT /codon_start=1
FT /transl_except=(pos:2709. .2711,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="ORF5; produced by translational readthrough of TAG
FT stop codon of ORF3"
FT /protein_id="ACZ73863.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIGGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY
FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQL"
FT CDS 2121. .2711
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF3"
FT /protein_id="ACZ73861.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIGGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 2152. .2604
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="ACZ73862.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLTISKPTQPGSSNSGRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
XX
SQ Sequence 2915 BP; 818 A; 779 C; 718 G; 600 T; 0 other;
gu190164 Length: 2915 09-NOV-2012 Type: N Check: 5519 ..
1 tgattacgcc gaggaggtgt atgagaaaac ccttgcagag cctaaagtgt
51 ggaaacctgc cagcggtaaa tactggtggg aaatggctga agaagaggat
101 gattttgtcg ttgaggcaaa gttacctccc cctgataaac ctgttgagaa
151 cgctacagca aaagagcaga ctccagctcc gactgtcgag aaagctatgg
201 ttgctgatca gccgactcca gaccagggaa acgagccaag tggcgccgac
251 cacttaaaaa caccggaatc caccccgctc aagcaagacg aatctacaaa
301 agagttgctc aacaacatcg tctcgcagtt gattcaaaag atcgacctga
351 gctccattgc aacgagggtg gaggagaaac tgctgcgtca ggcccagaac
401 aaacagcagc agaacggagg gaagaagttg cccagaaaac acaagacctc
451 gaacacttct tccaagccgc atacaaatgg gaagagtcca ccagtgacat
501 cccagggttc aggaaatgcg gcaaactccc cgcgctatac catcccccaa
551 aaccgaagag cacacaatgg ggagagcgca tcatctcaga gcacccagaa
601 atggcgtcca aagtcgccgg tttcgggtgg ccctccttcg gcgcccaagc
651 cgaagagaca agtctgagac tccaagcggc acgctggctt aaacgagctg
701 agtcagcgga aaagccgaca gaaaaacaac gcaagctcgt cattgatcgt
751 gtggttaagg catatgaacc gtgtagaact aatgccccac acaccagctc
801 ctctggcagc ctcatctggt ccgacttctt gaaagatttc aaggaggctg
851 tcgactcact agaactcgac gcaggaatag gtctcccata caagcttctt
901 cacaaagaca ctcatcgtca gatggttgaa gaccccaaat tcctgccgct
951 cctgacgcga ttgacctgga accgtttaca gaagatgtcc caggttaact
1001 tccaggagat gactcctgaa caactagtga gagaaggatt gtgcgatccg
1051 attcgtttgt tcgtcaaggg agaaccgcac aagcaggcaa aacttgatga
1101 agggcgctac cgcctcatca tgtcagtctc gctggtagat caactggtag
1151 cccgggtttt gtttcaggca caaaacaaaa gagagatagc tttgtggaga
1201 gctatccctt caaagcccgg tttcggctta tccacagaca gggaagcacg
1251 cgaattcatt gaatccctgt ccaagacagt agggtgttcc ccagcagaag
1301 tcattcatgg ctggaggaac aagatcgtac ccaccgactg ttccggtttt
1351 gactggtcag tcgccgactg gatgctcgaa gacgacatgg aagtgagaaa
1401 tcttctcaca atcaacaaca acgagctaac ccgccgcctc agggcgtgct
1451 ggttgaagtg catcacaaac tctgtgattt gcacatccgg cggtgtcttg
1501 tacgcccaaa ctcatcctgg agtgcaaaaa tctggatctt acaacacgag
1551 ttcatccaat tccaggattc gagtaatggc cgcttttcat tgcggcgcag
1601 attgggcgat agccatggga gacgatgcac ttgagtctcc aaactccaac
1651 atcaacgcgt atcaaaagtt ggggttcaaa gtcgaggttg cctcacagct
1701 agaattttgc tcacacgtct ttgagcagga ggacctcgcc aggccgttga
1751 acgtaaacaa aatgctttat cgtttaatct ttggatacaa tccggcctgt
1801 ggcaacgcgg aggtattgtg caattacctc caagctgtgg cttctgttct
1851 caacgagctt cgccatgatc cacagctagt tgctaccctc catgagtggc
1901 tggttcctgg cgccgccaca aaataaatac ggagggacat cccgagccac
1951 catataggtt gcaagagtgg aacgggaagt cctatagata agccgcgcga
2001 ttctggattt caaacttcta gcgggagttc tcatcggtgt tctcatcgca
2051 atccccgtag tgatcatagc ggcttacctg atattcctca aaatcagtgc
2101 acacatccga gcgatagtga atgaatacgg gcgctaaccg ctcacgaagg
2151 aatgtcagaa gacgcgctaa ccgtcgtaga cagactcggc cagtggtcgt
2201 ggtccgggct cccccaggac ctagacgagt acgacgacgt agagcacgtg
2251 ttggaggaaa cgctgtgcga ggaccgggag gaagaagcaa ccgggatgtt
2301 ctcactttca cggttgacga tctcaaagcc aactcaaccg ggatcctcaa
2351 attcgggccg aacttatctc agtacgcagc gttcaacaat ggcttactca
2401 aagcctacca tgagtataaa atcacaagtc tcactattca gtataactca
2451 tgctcctccg acgcaactcc aggtgcaatc gcacttgaag tggatacatc
2501 ctgctcccaa acaacaacag gctccaagat tactagcttc cccgtcaaga
2551 ggaacgccaa gaaagtcttc ccggccccct tcatcggggg gaaagatttc
2601 atgactacgt cagctgacca gttttggttg ctgtacaaag ggaatggaga
2651 ctcgagccta gcaggacaat tcgtctgccg atttgaatgc cttttccaga
2701 atcccaaata ggtaggcgac gctcccccaa cacccacccc aacaccaacc
2751 ccacctgctc cgaccccggc accggctcct aagtattttg gataccaagg
2801 agtgccgaac aacatcgtga aaacaagagg aaactctgaa tatctagatg
2851 tgggtccgct cgaaaatgtg accatgtatc tttggaaaga cgaatcgtgg
2901 agcattgagc aactg