Sequence of DPV Cucurbit aphid-borne yellows virus

Cucurbit aphid-borne yellows virus isolate CABYV-R-TW9 RdRp protein (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.

ACC No: GU324104

Dated: 2010-09-08 | Length: 1361 | CRC: 690817996

                
ID   GU324104; SV 1; linear; genomic RNA; STD; VRL; 1361 BP.
XX
AC   GU324104;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE   Cucurbit aphid-borne yellows virus isolate CABYV-R-TW9 RdRp protein (RdRp),
DE   coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
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OS   Cucurbit aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1361
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1361
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1361
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Benincasa hispida (wax gourd)"
FT                   /isolate="CABYV-R-TW9"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan County"
FT                   /collection_date="12-Jun-2008"
FT                   /db_xref="taxon:91753"
FT   gene            <1. .576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1. .576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /protein_id="ADM67495.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSD
FT                   GTLLSQQVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESVSSNLAKYAE
FT                   LGFKVEVSSKLEFCSHIFKREDLAIPINKAKMIYKLIHGYEPECGNAEVLINYLAACFS
FT                   VLNELRSDPQLVATLHQWLVLPVQPQKI"
FT   gene            776. .>1361
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776. .>1361
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ADM67496.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSSRRNRVVVVNPIGGPPRGRRQRRN
FT                   RRRANRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   NMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKNGLRRWTARQINGVEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            804. .>1361
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             804. .>1361
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /protein_id="ADM67497.1"
FT                   /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE
FT                   LEEEAQAKHSYFQRTISRAVPQEVSPSGRLFQRAQHSALEYSRPTMNIRSTWSSWSSSP
FT                   RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRSTGWNGTTQPRINSR
FT                   SSTKGTDLPRLREASGSPSSARS"
XX
SQ   Sequence 1361 BP; 370 A; 339 C; 335 G; 317 T; 0 other;

gu324104 Length: 1361  08-SEP-2010  Type: N  Check: 6779  ..

       1  agcgtttcgg actggctctt ggaagatgat atggaagtcc gaaaccgcct
      51  gacgcttgat atcaacgaga ccaccaagcg cttgagatct gcttggttaa
     101  aatgcatctc gaatagcgtc ctcagcctct ccgatgggac tctgttgtca
     151  caacaagtcc ccggagtaca gaaatctggc agctacaata cctcatcctc
     201  taactctagg attcgagtga tggctgcata tcattgcggg gctgagtggg
     251  cgatggcaat gggcgatgat gcccttgagt cagtcagctc gaacctagcg
     301  aaatacgctg agctaggttt caaagtcgag gtttcctcaa aactggaatt
     351  ttgttcacac atttttaaac gtgaggacct cgccattccg atcaacaaag
     401  ccaagatgat atataaactg atacatggct atgaaccgga atgtggcaac
     451  gctgaggttt tgatcaacta tctggccgcc tgtttttcag ttctcaatga
     501  attgcggtca gatcctcagc tcgttgcaac tctccatcag tggctggttc
     551  ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca
     601  ggcacacacg agttgcaagc actggaagtt taagtctcgt taccaagagt
     651  ccaaacaata gattataaat ttctcgcagg attttctagc ggtctattgt
     701  ctgcaatacc tatcacggta atcggactct attttgtcta cctaaagatt
     751  tcagcacacg tgcgagcaat tgttaatgaa tacggccgtg gctagaaatc
     801  aaaatgcagg gaggcgcagg cgacgaaatc agcgctcttc acggcgcaac
     851  cgcgtggttg tggtcaaccc gattggggga ccaccgcgcg gaagacgaca
     901  acgacgaaac cgccgacgcg ctaatcgagg aggcagagct agaggaggaa
     951  gcccaggcga aacattcgta ttttcaaagg acaatctcac gggcagttcc
    1001  tcaggaagta tcaccttcgg gccgtctctt tcagagagcc cagcattcag
    1051  ctctggaata ctcaaggcct accatgaata taagatcaac atggtccagt
    1101  tggagttcat ctccgaggcc tcttccacct cctcgggttc catctcttat
    1151  gagttggacc cccactgcaa gcttagctcc ctccaatcca cggttaataa
    1201  gtttggaatc accaagaatg gattgcgaag atggacagct aggcagatca
    1251  acggggtgga atggcacgac gcaaccgagg atcaattcaa gatcctctac
    1301  aaagggaacg gatcttcctc ggttgcggga agcttcagga tcaccatcaa
    1351  gtgccaggtc c