Sequence of DPV Suakwa aphid-borne yellows virus

Suakwa aphid-borne yellows virus isolate SABYV-TW9 RdRp protein (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.

ACC No: GU324111

Dated: 2010-09-08 | Length: 1367 | CRC: 2123088167

                
ID   GU324111; SV 1; linear; genomic RNA; STD; VRL; 1367 BP.
XX
AC   GU324111;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Suakwa aphid-borne yellows virus isolate SABYV-TW9 RdRp protein (RdRp),
DE   coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Suakwa aphid-borne yellows virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC   Polerovirus.
XX
RN   [1]
RP   1-1367
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1367
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the EMBL/GenBank/DDBJ databases.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1367
FT                   /organism="Suakwa aphid-borne yellows virus"
FT                   /host="Benincasa hispida (wax gourd)"
FT                   /isolate="SABYV-TW9"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan County"
FT                   /collection_date="12-Jun-2008"
FT                   /db_xref="taxon:646010"
FT   gene            <1. .579
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1. .579
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /protein_id="ADM67516.1"
FT                   /translation="SVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSVICLSD
FT                   GTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAIAMGDDALESADTIIPLYEQ
FT                   YGLKVEVSDKLEFCSHEFKSSSLAIPMNIGKMLYKLIHGYEIFPGMSSIQVTINYLTAC
FT                   YALLNELRHVPEAASLVAQCLAPVEAQKV"
FT   gene            779. .>1367
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             779. .>1367
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ADM67517.1"
FT                   /translation="MNTVVVRNRNGMGRRRRNSRRNAKGNRVVVVQAPGAPQRGRRRRR
FT                   NGRRPSRGGRARGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK
FT                   ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWSAKFINGME
FT                   WHDASEDQFRILYKGNGSSSTAGSFRITIRCQV"
FT   gene            807. .>1367
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             807. .>1367
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /protein_id="ADM67518.1"
FT                   /translation="MAWEEGEGIAGAMQKATAWLWSKPLGLHSAEDDDDETVDALLEEA
FT                   ELEEQAKAKHSYSAKTISRAVPLEQSRSGRLYQTAQHSALEYSRPTMSIKSQWLSWSSS
FT                   PRPLPRPPVPSLMSWTPIANLAPSNPRLINSVSQRVDHEHGALSSSTGWNGTTPQRISS
FT                   ESFTKETEVPQRRALLESPSGVKS"
XX
SQ   Sequence 1367 BP; 384 A; 339 C; 320 G; 324 T; 0 other;

gu324111 Length: 1367  08-SEP-2010  Type: N  Check: 1406  ..

       1  agtgtctcat cgtggatgct cgaggatgat atggaggtta ggaacaacct
      51  caccatcaat aacaacgagc tcaccaggcg tcttcgcgca tgctggttga
     101  agtgcatatc gaactctgtg atatgcctgt ccgatgggac tttgctagcc
     151  caggagttcc ccggtataca gaaatcgggc tcctacaaca ccagctctac
     201  caactcaaga gtgagggtaa tgctctcaat ttacgctggt gcatcctggg
     251  ctatagcaat gggcgatgac gcccttgagt ccgctgatac gataatccca
     301  ttatacgagc aatacggact caaagtcgag gtctctgaca aactggaatt
     351  ttgttctcat gagttcaaaa gttcaagcct cgccatcccc atgaatatag
     401  ggaaaatgct ttataagctc atacatggat atgaaatctt cccggggatg
     451  tccagcattc aggtcacaat caattatttg actgcctgtt acgcgcttct
     501  aaacgagctg cgtcatgtac ctgaagctgc ttcacttgtt gcgcagtgcc
     551  tcgctccagt cgaggcacaa aaagtttaaa taaaagcgca cacacagaac
     601  tagccggaaa tacgttgttg caattgccgg aagttaaaag tcaactacaa
     651  cataggccaa ccggatttca aatttttagc aggatttact tcgggcttcc
     701  tgatagctgt accaatttca gcacttggcc tatatttgat ctacctcaag
     751  atttctaaac acgtgcaatc aatagttaat gaatacggtc gtggttagaa
     801  atcgaaatgg catgggaaga aggagaagga atagccggcg caatgcaaaa
     851  ggcaaccgcg tggttgtggt ccaagcccct ggggctccac agcgcggaag
     901  acgacgacga cgaaacggtc gacgcccttc tcgaggaggc agagctagag
     951  gaacaagcca aggcgaaaca ttcgtattca gcaaagacaa tctcacgggc
    1001  agttcctctg gagcaatcac gttcgggccg tctttatcag acagcccagc
    1051  attcagctct ggaatactca aggcctacca tgagtataaa atctcaatgg
    1101  ttaagttgga gttcatctcc gaggcctctt ccacgtcctc cggttccatc
    1151  tcttatgagt tggaccccca ttgcaaactt agctccctcc aatccacggt
    1201  taataaattc ggtatcacaa agagtggatc acgaacatgg agcgctaagt
    1251  tcatcaacgg gatggaatgg cacgacgcct cagaggatca gttccgaatc
    1301  ctttacaaag gaaacggaag ttcctcaacg gcgggctctt ttagaatcac
    1351  catcaggtgt caagtcc