Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate HAND polyprotein gene, partial cds.
ACC No: GU563321
Dated: 2011-01-26 | Length: 2258 | CRC: 970974449
ID GU563321; SV 1; linear; genomic RNA; STD; VRL; 2258 BP.
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AC GU563321;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate HAND polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2258
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2258
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2258
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="HAND"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2127
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73016.1"
FT /translation="DGFFIPKLKKERIIAILEWERGDEVMRTRSALNAAYIESFGYDDL
FT MMEIERFAVFWASEKGCEYPLLDRKRVEGLYLDEFTEINGEWLSGILPPSFENCYIDLQ
FT VVDRPQSLNVAKREEEVTSRFRMGIEAPITFVTGNAQKQKEVKQIFGPTIPIVSQKVDL
FT PEPQGTAEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFLEGIGLEGLY
FT KLVEPYQNRMASALCVFAFVNKVGDDPIIFKGVLRGEIVMPRGPSSFGWDPIFQPLDWK
FT RTFAEMMTEEKNMISHRFRALSLVRDFLKSSSYFSFAKGLDRDIFIDVQAIDKDEIEAE
FT ITKLKELWRDNRPTKTRSPFESRRLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGE
FT VASPESSEDEEQRADKGKAPMEPLAERNQSEKSKSEDEGKQKKTRFRIRAGGGSEKRDD
FT IDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLA
FT SGVEVENWAIEVSKAYGVTIQEFYRTILPAWIVNCIVNGTSDEGKNERSWRAVELNAQG
FT EDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSI
FT ENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRNKTKLFALAAPGDDNNVDKERHTTRD
FT VSATRHSYAGAAIE"
FT mat_peptide <1. .312
FT /product="NIb"
FT mat_peptide 313. .990
FT /product="HAM1-like protein"
FT mat_peptide 991. .2124
FT /product="CP"
FT 3'UTR 2128. .2258
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SQ Sequence 2258 BP; 710 A; 365 C; 591 G; 592 T; 0 other;
gu563321 Length: 2258 26-JAN-2011 Type: N Check: 2659 ..
1 gatggttttt tcattccaaa gttgaagaaa gagagaatca tagctatcct
51 agagtgggag cgtggagatg aagttatgag aacacgaagt gcgctaaacg
101 cagcctatat tgagagtttt ggctatgatg atttgatgat ggaaattgag
151 cgatttgctg tcttctgggc gtccgaaaag ggttgtgagt atccattgtt
201 agacagaaag cgggttgagg ggctttactt ggatgaattc actgagatta
251 atggggaatg gctgagtgga atcttaccac catctttcga gaattgttac
301 attgacctac aagtggtaga cagacctcaa tcattgaatg tggccaagag
351 agaggaagag gttaccagta gattccggat ggggatcgaa gcgccaataa
401 catttgtcac agggaatgca caaaaacaga aggaagtgaa acaaatcttt
451 ggtcccacca ttccaattgt ttctcagaaa gttgatttgc cagaaccaca
501 agggacggct gaggaaatta tcaaagaaaa agcacgagta gctgctgaac
551 ttgttggagg gccagttctc gtagaagata cgagtttgtg ttttgatgct
601 ctcaatggtc tcccaggacc atacattaag tggtttttgg aagggattgg
651 actggaagga ctatataagt tggtggagcc gtatcagaat agaatggcta
701 gtgctctctg tgtgtttgct tttgtaaata aagttggtga tgatcctata
751 atttttaagg gtgtgctaag aggtgagatt gtaatgccac gcggaccaag
801 ttcgtttgga tgggatccaa tttttcagcc actggattgg aaaaggacat
851 ttgctgagat gatgactgag gagaaaaaca tgatatccca tcgatttcga
901 gctctgtcgt tggtgagaga tttcttgaag agctcgagct attttagttt
951 tgcaaagggt ttagatcgtg acatctttat tgatgttcaa gcaattgaca
1001 aggatgagat tgaagctgaa ataacaaaat tgaaggaatt gtggagggac
1051 aacaggccaa ctaaaactcg aagtccattc gagtcaagga ggcttcgtgc
1101 ccctcaagta gctcgtgtga acgaactgct caaacaactg aaggatgctg
1151 ggatacaaac aagtaaaagg ccatgtggag agcctgatga aggggaagtt
1201 gctagcccag agtcaagtga agacgaggag caacgggcgg ataaaggaaa
1251 agcgcctatg gagccacttg ctgaacgaaa tcaatcagag aagtctaaaa
1301 gtgaggatga ggggaaacag aagaagacaa gattcagaat aagagccggt
1351 ggtggaagtg agaagagaga tgatatagac aagattccaa ccaatgctct
1401 agaatttcga aagagcttca agccaccaaa ggtgtcacaa gcagcatatg
1451 tgtggatacc gcgttcgcaa agagataatt tgacacctga tgtcatccag
1501 aactttctag cgtacgtgcc tccatcacat gctatagaca atcaattggc
1551 ttctggagtt gaagttgaaa attgggctat cgaagtctcg aaagcctatg
1601 gagtcaccat tcaagagttt tatagaacga tcctacctgc ttggattgtc
1651 aattgtattg tgaatgggac tagtgacgag gggaagaatg agagatcgtg
1701 gagagctgtt gagctaaatg cacagggtga ggatattgat gattcagaat
1751 accctatgga accaatgtat aaatttgctc tcccgacaat gaggaaaata
1801 atgagaaatt tttccagcca agcaatattg atgtatcaga atagtgtgac
1851 tgctggaaaa gcttttgtga taaaagcagc ccgaaatgcc gggtacacaa
1901 gcattgaaaa taagtggtta ggtattgact tcctagccga agcacaactg
1951 tcacaaagcc aacttgatat taaacatcaa atattggctg ctaatgttgg
2001 tagaaataaa actaagttgt ttgctttagc tgctcctggt gatgataata
2051 atgtggataa agaaaggcac actacgcgtg atgttagtgc aaccaggcat
2101 agctatgcgg gtgccgctat cgaataaatt agtttgaaag tcaagtttgg
2151 tggagtttta ggtagcttgt tatgttttgg ttgtgaagcc aagatatatt
2201 caggagccct ttctccatat ccttttattt agtgtggaaa cacaatatat
2251 aaaagtac