Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate PANG polyprotein gene, partial cds.
ACC No: GU563322
Dated: 2011-01-26 | Length: 2258 | CRC: 1728972226
ID GU563322; SV 1; linear; genomic RNA; STD; VRL; 2258 BP.
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AC GU563322;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate PANG polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2258
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2258
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2258
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="PANG"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2127
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73017.1"
FT /translation="DGFYIPKLKKERIVAILEWERGDEVMRTRSALNAAYIESFGCDDL
FT MTEIERYAVFWASEKGCEYPLLDRKRVEGLYLDEYTDINEEWLSGILPPSFENCYIDLQ
FT VVDRSQSSSVAKREEEVTSKIRMGIEAPITFVTGNAQKLKEVKQIFGPTIPVVSRKVDL
FT PEPQGTVEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFMEGVGLEGLY
FT KLVEPYQNKMASALCVFAFVNKAGDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWR
FT RTFAEMMAEEKNMISHRFRALSLVRDFLKNSSYFSFAKGVDRDLFIDVQAIDKDEIEAE
FT ITKLKEMWRNNKPTKTRSSFESKRLRAPQVARVDELLKQLKDAGIQTSKRPCGELDEGE
FT VASSESSEDEEQQTNKGKAPMESSTERNQSEKPIGEEEDKQKKTRFRIRAGGGSEKRDD
FT IDKIPTNALEFRKSFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLA
FT SGVEVENWAIGVSKAYGVTIQEFYRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQG
FT EDIDDSEYPMEPMYKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSI
FT ENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRSKTRLFALAAPGDDNNVDKERHTTRD
FT VSATRHSYAGAAIE"
FT mat_peptide <1. .312
FT /product="NIb"
FT mat_peptide 313. .990
FT /product="HAM1-like protein"
FT mat_peptide 991. .2124
FT /product="CP"
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SQ Sequence 2258 BP; 719 A; 355 C; 583 G; 601 T; 0 other;
gu563322 Length: 2258 26-JAN-2011 Type: N Check: 6952 ..
1 gatggttttt acattccaaa gttgaagaaa gagaggatcg ttgcaatact
51 tgagtgggaa agaggagacg aggttatgag gacaagaagc gctctcaatg
101 cagcttacat cgagagcttt ggttgtgatg acttgatgac agagattgag
151 aggtatgctg tgttctgggc atctgaaaag ggttgtgagt acccattatt
201 ggatagaaag cgagttgaag ggctttactt ggatgaatat actgatatta
251 acgaggaatg gctgagtgga atcttaccac catcgttcga gaattgttat
301 attgacttac aagtggtgga caggtctcag tcatcgagtg ttgctaagag
351 agaggaggaa gtcactagta aaattcggat ggggatcgaa gcgccaatta
401 catttgtcac agggaatgca caaaaactga aagaagttaa acaaatcttt
451 ggtcccacta ttccagtcgt ctctcggaaa gttgatttac cagaaccaca
501 agggacagtt gaggagatta ttaaagaaaa agcacgagta gctgctgaac
551 tcgttggagg gccagttctc gtagaagaca cgagtttgtg ttttgatgct
601 ctcaatggtc tcccaggacc atacattaag tggtttatgg aaggggttgg
651 gttggaagga ttgtataagt tggtggagcc atatcagaat aaaatggcta
701 gcgctctctg tgtatttgct tttgtgaata aagctggtga tgatcctata
751 atctttaagg gtgtgttaag aggtgagatt gtgatgccac gcggaccaaa
801 ttcatttggg tgggacccaa tttttcagcc gctcaactgg agaaggacat
851 ttgctgagat gatggccgag gagaagaata tgatatctca tcgatttcga
901 gctctgtcgt tagtgagaga ctttttgaag aactcgagct attttagctt
951 tgcaaagggc gttgatcgtg atctcttcat tgatgttcaa gcaattgaca
1001 aggatgagat tgaggctgaa ataacaaaat tgaaagaaat gtggaggaac
1051 aacaagccaa ctaaaactcg aagttctttt gaatcaaaga ggcttcgtgc
1101 tcctcaagtg gcccgtgtgg acgaactgct taaacaactg aaagatgctg
1151 ggatacaaac aagtaagagg ccgtgtggag aacttgatga aggagaagtt
1201 gctagctcag agtcaagtga agatgaggag caacaaacaa acaaaggaaa
1251 agcgcctatg gaatcatcta ctgaacgaaa tcaatcagag aaacctatag
1301 gtgaggagga ggataaacaa aagaaaacaa ggtttagaat aagagctggt
1351 ggtggaagtg agaagagaga tgatatagat aagattccaa ccaatgctct
1401 ggaatttcga aagagcttca aaccaccgaa agtgtcacaa gcggcatatg
1451 tgtggatacc gcgttcgcaa agagataatt tgacgcctga tgtcatacag
1501 aactttctag cgtacgtgcc tccatcacat gctatagaca atcaattggc
1551 ttccggagtt gaagttgaga attgggccat cggagtttca aaagcttatg
1601 gagtcaccat tcaagagttt tataggacga tcctacctgc ttggattgtc
1651 aattgtattg tgaatgggac tagcgatgaa aggaaaaatg agaaatcgtg
1701 gagagctgtt gagttaaatg cacagggcga ggatattgat gattcagaat
1751 accctatgga accaatgtac aaatttgctc tcccaacaat gaggaaaata
1801 atgagaaatt tttccagcca agcaattcta atgtatcaga atagtgtgac
1851 tgctggaaaa gcttttgtaa taaaagcagc ccgaaatgct gggtatacaa
1901 gcattgaaaa caagtggttg ggtattgact tcctagccga agcacaattg
1951 tcacaaagcc aacttgatat caaacatcaa atattggctg ctaatgttgg
2001 tagaagtaaa actaggttgt ttgctttagc tgctcctggt gatgataata
2051 atgtggataa agaaaggcac actacgcggg atgttagtgc aactaggcat
2101 agctatgctg gtgctgctat tgaataaatt aatttgaaag tcaagtttgg
2151 tggagtttta ggtagcttgt tatattttgg ttgtgaagcc aagatatatt
2201 caggagccct ttctccatat ccttttattt agtgtggaga cgcaatatat
2251 aaaagtac