Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate WETE polyprotein gene, partial cds.
ACC No: GU563323
Dated: 2011-01-26 | Length: 2129 | CRC: 1551676889
ID GU563323; SV 1; linear; genomic RNA; STD; VRL; 2129 BP.
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AC GU563323;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate WETE polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2129
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2129
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2129
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="WETE"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2034
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73018.1"
FT /translation="LNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLDRKRVEGLY
FT LDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQLSSMTKREEEVTSKVRMGIEAPITF
FT VTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKARVASELIGGPVLVEDT
FT SLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFINKVGDDPIIFK
FT GVLRGEIVMPRGPNSFGWDPIFQPINWRRTFAEMMAEEKNMISHRFRALSLVRDFLKDS
FT SYFSFAKGVDRDFFIDVQAIDKDEIEAEITKLKELWRNNKPTRNRSPFESRRLRAPQVA
FT RVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKAPMEPPAERNQPE
FT KSVGEDEEKHKKTRFRIRAGGGDEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWIPRS
FT QRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTILPAW
FT IVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNFSSQ
FT AILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANV
FT GRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT mat_peptide <1. .219
FT /product="NIb"
FT mat_peptide 220. .897
FT /product="HAM1-like protein"
FT mat_peptide 898. .2031
FT /product="CP"
FT 3'UTR 2035. .>2129
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SQ Sequence 2129 BP; 696 A; 349 C; 527 G; 557 T; 0 other;
gu563323 Length: 2129 26-JAN-2011 Type: N Check: 6036 ..
1 cttaatgcag cttacattga gagttttggt tatgatgatt taatgacaga
51 gattgaaagg tttgctgtgt tctgggcatc tgaaaagggt tgtgagtacc
101 cgttattgga tagaaagcga gttgaagggc tttacttgga tgaacacact
151 gatattaatg aggaatggtt gagtggcatc ctaccaccat cttttgagaa
201 ttgctacatt gatttacagg tggtagacag gcctcagtta tcgagcatga
251 ctaagagaga ggaagaagtc acaagtaaag ttcggatggg gatcgaagcg
301 ccaattacat tcgtaacagg gaatgcacaa aaattgaagg aagtaaaaca
351 aatctttggt cccactattc caatcatctc tcggaaagtt gacttgccag
401 aaccacaagg aacagttgag gaaattatta aggaaaaagc acgtgtagcg
451 tctgagttga ttggagggcc agttctcgta gaagatacaa gtttgtgttt
501 tgatgctctc aatggtctcc caggaccata cattaagtgg tttatggaag
551 gaattggact agaaggatta tacaagttgg tggagccata tcaaaataaa
601 atggctagtg ctctctgtgt gtttgctttt ataaataaag ttggcgatga
651 tcctataatc tttaagggtg tgctaagagg tgagattgta atgccacgcg
701 gaccaaactc atttgggtgg gatccaattt tccagccaat taactggaga
751 aggacatttg ctgagatgat ggccgaggag aaaaatatga tatctcatcg
801 atttcgagct ctgtcgctgg taagagactt tttgaaggac tcaagctatt
851 tcagctttgc aaagggcgtt gatcgtgatt tcttcattga tgtccaagca
901 attgacaagg atgaaattga agctgaaata acaaaattga aggaattgtg
951 gaggaacaac aagccaacta gaaatcgaag tccatttgaa tcaaggaggc
1001 ttcgtgcccc tcaagtagct cgtgtgaacg agctgctcaa acaactgaaa
1051 gatgctggga ttcaaacaag taaaaggcca tgtggagaac ctgatgaagg
1101 ggaagttgct agtccagagt caagtgagga tgaggagcaa cgaacaaaca
1151 aaggaaaagc acctatggaa ccacctgccg agcgaaatca accagagaag
1201 tctgtaggtg aagatgagga gaaacataaa aagacaaggt tcagaataag
1251 agctggtggt ggagatgaaa agagagatga tatagataag attccaacca
1301 atgctctaga attccggaag agtttcaaac caccaaaagt gtcacaagcg
1351 gcatatgtgt ggataccgcg ttcgcaaaga gacaatttga cacctgatgt
1401 catacagaac tttctagcgt acgtgcctcc atcacatgct atagacaacc
1451 aattggcttc cggagttgaa gttgagaatt gggccatcga agtctcaaaa
1501 gcttatggag tcaccattca agagttttat agaacgatcc tacctgcttg
1551 gattgttaat tgtattgtga atgggactag cgatgagagg aagaatgaga
1601 aatcgtggag agctgttgag ctaaatgcac agggtgagga tattgatgat
1651 tcagaatacc ctatggaacc aatgtataaa tttgctctcc cgacaatgag
1701 aaaaataatg agaaattttt ccagccaagc aattttaatg tatcagaata
1751 gtgtgactgc tggaaaagct tttgtaataa aagcagctcg aaatgccggg
1801 tatacaagca ttgaaaataa gtggctgggt attgacttcc tagccgaagc
1851 acaattgtca caaagccaac tggatatcaa acatcaaata ttggctgcta
1901 atgttggtag aagtaaaact aagttgtttg ctttagctgc tcctagtgat
1951 gataataatg tggataaaga aaggcacact acgcgggatg ttagtgcaac
2001 caggcatagc tatgcaggtg ctgctattga ataaattaat ttaaaagtca
2051 aatttggtgg agttttaggt aacttgttat attctggttg tgaagccaag
2101 atatattcag gagccctttc tccatatcc