Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate KOR9 polyprotein gene, partial cds.
ACC No: GU563324
Dated: 2011-01-26 | Length: 2543 | CRC: -600904190
ID GU563324; SV 1; linear; genomic RNA; STD; VRL; 2543 BP.
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AC GU563324;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate KOR9 polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2543
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2543
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2543
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="KOR9"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2412
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73019.1"
FT /translation="GNNSGQPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDD
FT LILNAPDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARRDGFFIPKLK
FT KERIVAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLD
FT RKRVEGLYLDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQSSNMTKREEEVTSKVRM
FT GIEAPITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIG
FT GPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKV
FT GDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWRRTFAEMMAEEKNMISHRFRALSL
FT VRDFLKDSSYFNFAKGVDRDCFIDVQAIDKDEIEAEITKLKELWRTNKPTRTRSPFESR
FT RLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTNKGKAPMEP
FT PAEQNQPEKSVGEDEEKHKKTRFRIRAGGGDGKRDDIDKIPTNALELRKSFKPPKVSQA
FT AYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEF
FT YRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYRFALPTMRK
FT IMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIK
FT HQILAANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT mat_peptide <1. .597
FT /product="NIb"
FT mat_peptide 598. .1275
FT /product="HAM1-like protein"
FT mat_peptide 1276. .2409
FT /product="CP"
FT 3'UTR 2413. .2543
XX
SQ Sequence 2543 BP; 830 A; 398 C; 634 G; 681 T; 0 other;
gu563324 Length: 2543 26-JAN-2011 Type: N Check: 109 ..
1 ggtaataaca gtgggcagcc ctcaactgtt gttgacaaca ccataatttt
51 gatgattgtg gttgagtact gtagagaagt gatggcacat gaaggtattg
101 aaatgaaata taaatacatg tgtaatggag atgacctcat tcttaatgcg
151 cctgatgaag aaattccaat aattcagagt cgttttaaga atttgttcgc
201 agaatgtggt ttgaattatg actttgatga tgtccacaag gagatagaca
251 caatagagta tatgagccac tcatttgctc gcagagatgg atttttcatt
301 ccaaagttga agaaggagag aatagttgca atacttgagt gggaaagagg
351 agatgaggtc atgaggacga gaagcgctct taatgcagct tacattgaaa
401 gttttggtta tgatgattta atgacagaga ttgaaaggtt tgctgtgttc
451 tgggcatctg aaaagggttg tgagtacccg ttattagata gaaagcgagt
501 tgaagggctt tacttggatg aacacactga tattaatgag gaatggttga
551 gtggcatttt accaccatct tttgagaatt gttacattga tttacaggtg
601 gtagacaggc ctcagtcatc gaacatgact aagagagagg aagaagtcac
651 aagtaaagtc cggatgggga tcgaagcacc aattacattc gtgacaggaa
701 atgcacaaaa attgaaggaa gtaaaacaaa tctttggtcc cactattcca
751 atcatctctc ggaaagttga cttgccagaa ccacaaggaa cagttgagga
801 aattattaaa gaaaaagtac gtgtagcgtc tgagttgatt ggagggccag
851 ttctcgtaga agatacaagt ttgtgttttg atgctctcaa tggtctccca
901 ggaccataca ttaagtggtt tatggaaggg attggactag aaggattata
951 taagttggtg gagccgtatc aaaataaaat ggctagtgct ctctgcgtgt
1001 ttgcttttgt aaataaagtt ggtgatgatc ctataatctt taagggtgtg
1051 ctaagaggtg agattgtaat gccacgcgga ccaaattcat ttgggtggga
1101 cccaattttc cagccactta actggagaag gacatttgcc gagatgatgg
1151 ccgaggagaa gaatatgata tctcatcgat ttcgagctct gtcgttggtg
1201 agagattttt taaaggactc aagctatttc aactttgcaa agggcgttga
1251 tcgtgattgc tttattgatg tccaagcaat tgataaggat gagattgaag
1301 ctgaaataac aaaattgaag gaattgtgga ggaccaacaa gccaactaga
1351 actcgaagtc catttgaatc aaggaggctt cgtgcccctc aagtagctcg
1401 cgtgaacgag ctgctcaaac aattgaaaga tgctgggatt caaacaagta
1451 aaaggccatg tggagaacct gatgaagggg aagttgctag cccagagtca
1501 agtgaagatg aggagcaacg aacaaacaaa ggaaaagcac ctatggaacc
1551 acctgctgag caaaatcaac cagagaagtc tgtaggtgag gatgaggaga
1601 aacataaaaa gacaaggttc agaataagag ctggtggtgg agatggaaag
1651 agagatgata tagataagat tccaaccaat gctctagaac ttcggaagag
1701 tttcaaacca ccaaaagtgt cacaagcggc atatgtgtgg ataccgcgtt
1751 cgcaaagaga caatttgaca cctgatgtca tacagaactt tctggcgtac
1801 gtgcctccat cacatgctat agacaatcaa ttggcttccg gagttgaagt
1851 tgagaattgg gccatcgaag tctcaaaagc ttatggagtc accattcaag
1901 agttttatag aacgatccta cctgcttgga ttgttaattg tattgtgaat
1951 gggactagcg atgagaggaa gaatgagaaa tcgtggagag ctgttgagct
2001 aaatgcacag ggtgaggata ttgatgattc agaataccct atggaaccaa
2051 tgtatagatt tgctctcccg acaatgagga aaataatgag aaatttttcc
2101 agccaagcaa ttttaatgta tcagaatagt gtgactgctg gaaaagcttt
2151 tgtaataaaa gcagctcgaa atgccgggta tacaagtatt gaaaataagt
2201 ggttgggtat tgacttccta gccgaagcac aattgtcaca aagccaactg
2251 gacatcaaac atcaaatatt ggctgctaat gttggtagaa gtaaaactaa
2301 gttgtttgct ttagctgctc ctagtgacga taataatgtg gataaagaaa
2351 ggcacactac gcgggatgtt agtgcaacta ggcatagcta tgcaggtgct
2401 gctattgaat aaattaatct aaaagtcaag attggtggag ttttaggtaa
2451 tctgttatat tctggttgtg aagccaagat atattcagga gccctttctc
2501 catatccttt tatttagtgt gggaacacaa tatataaaag tac