Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate ZANZ polyprotein gene, partial cds.
ACC No: GU563325
Dated: 2011-01-26 | Length: 2183 | CRC: 1397836230
ID GU563325; SV 1; linear; genomic RNA; STD; VRL; 2183 BP.
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AC GU563325;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate ZANZ polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2183
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2183
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2183
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="ZANZ"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2088
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73020.1"
FT /translation="VAILEWERGDEVMRTRSALNAAYIESFGYDDLMTEIERYAVFWAS
FT EKGCEYPLLDRKRVEGLYLDEYTDINEEWLSGILPPSFENCYIDLQVVDRSQSTNVAKR
FT EEEVTSKIRMGIEAPITFVTGNAQKLKEVKQIFGPTIPIVSRKVDLPEPQGTVEEIIKE
FT KARVAAELVGGPVLVEDTSLCFDALNGLPGPYIKWFMEGIGLEGLYRLVEPYQNKMASA
FT LCVFAFVNKVGDDPIIFKGVLRGEIVMPRGPNSFGWDPIFQPLNWRRTFAEMMPEEKNI
FT LSHRFRALSLVRDFLKNSSYFSFAKGVDRDLFIDVQAIDKDEIEAEITKLKEMWRNNKP
FT TRTRSPFESKRLRAPQVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSDDEEHQ
FT TNKGKAPMESPTERNQSEKPIGEEEEKHKKTRFRIRAGGGSEKRDDIDKIPTNALEFRK
FT SFKPPKVSQAAYVWIPRSQRDNLTPDVIQNFLAYVPPSHAIDNQLAPGVEVENWAIEVS
FT KAYGVTTQEFYRTILPAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPM
FT YKFALPTMRKIMRNFSSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEA
FT QLSQSQLDIKHQILAVNVGRNKTKLFALAAPGDDNNVDKERHTTRDVSATRHSYAGAAI
FT E"
FT mat_peptide <1. .273
FT /product="NIb"
FT mat_peptide 274. .951
FT /product="HAM1-like protein"
FT mat_peptide 952. .2085
FT /product="CP"
FT 3'UTR 2089. .2183
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SQ Sequence 2183 BP; 699 A; 353 C; 561 G; 570 T; 0 other;
gu563325 Length: 2183 26-JAN-2011 Type: N Check: 2755 ..
1 gttgcaatac ttgagtggga aagaggagac gaggtcatga ggacgagaag
51 cgctctcaat gcagcttaca tcgagagctt tggttatgat gatttgatga
101 cagagattga gaggtatgct gtattctggg catctgaaaa gggttgtgag
151 tacccattgt tggacagaaa gcgagttgaa gggctttact tggatgaata
201 tactgatatt aacgaggaat ggctgagtgg aatcttacca ccatctttcg
251 agaattgtta cattgactta caagtggtgg acaggtctca gtcaacgaat
301 gttgctaaga gagaggaaga agttactagt aaaattcgaa tggggatcga
351 agcaccaatt acatttgtca cagggaatgc acaaaaattg aaagaagtga
401 aacaaatctt tggtcccact attccaattg tttctcggaa agttgattta
451 ccagaaccac aagggacggt tgaggagatt atcaaagaaa aagcacgagt
501 ggctgctgaa ctcgttggag ggccagtttt agtagaagac acgagtttgt
551 gttttgatgc tctcaatggt ctcccaggac catacattaa gtggtttatg
601 gaagggattg gactagaagg attgtatagg ttggtggaac catatcagaa
651 taaaatggct agcgctctct gcgtgtttgc ttttgtgaat aaagttggtg
701 atgatcctat aatctttaag ggtgtgctaa gaggtgagat tgtgatgcca
751 cgcggaccaa attcatttgg gtgggaccca atttttcagc cgcttaactg
801 gagaaggaca tttgctgaga tgatgcctga ggagaaaaat atattatctc
851 atcgatttcg agctctgtcg ttggtgagag actttttgaa gaactcgagc
901 tatttcagct ttgcaaaggg cgttgatcgt gatttattta ttgatgttca
951 agcaattgac aaggatgaga ttgaagctga aataacaaaa ttaaaggaaa
1001 tgtggaggaa caacaagcca actagaactc gaagtccatt tgaatcaaag
1051 aggcttcgtg ctcctcaagt ggcccgtgtg aatgaactgc ttaaacaact
1101 gaaagatgct gggatacaaa caagtaagag gccatgtgga gaacctgatg
1151 aaggagaagt cgctagccca gagtcaagcg acgatgagga gcaccaaaca
1201 aacaaaggaa aggcgcctat ggaatcacct actgaaagga atcaatcaga
1251 gaaacctata ggtgaggagg aggagaaaca taagaagaca aggttcagaa
1301 taagagctgg tggtggaagt gaaaagagag atgacataga taagattcca
1351 accaacgctt tagaatttcg aaagagcttc aaaccaccaa aagtgtcaca
1401 agcagcatat gtgtggatac cgcgttcgca aagagataat ttgacgcctg
1451 acgtcataca gaactttcta gcgtacgtgc caccatcaca tgctatagac
1501 aatcaattgg cccctggagt tgaagttgag aattgggcca tcgaagtttc
1551 aaaagcttat ggagtcacca ctcaagagtt ttataggacg atcctacctg
1601 cttggattgt caattgtatt gtgaatggga ctagcgatga gaggaagaat
1651 gagaaatcgt ggagagctgt tgagttaaat gcacagggcg aggatattga
1701 tgattcagag tatcctatgg aaccaatgta caaatttgct ctcccgacaa
1751 tgaggaaaat aatgaggaat ttttccagcc aagcaattct tatgtatcag
1801 aatagtgtga ctgctggaaa agcttttgtg ataaaagcag cccgaaatgc
1851 tgggtataca agcattgaaa acaagtggtt gggtattgac ttcctagccg
1901 aagcacaatt gtcacaaagc caacttgata tcaaacatca aatattggct
1951 gttaatgttg gtagaaataa aactaagttg tttgctttag ctgctcctgg
2001 tgatgataat aatgtggata aagaaaggca cactacgcgg gatgttagtg
2051 caactaggca tagctatgct ggtgctgcta ttgagtaaat taatttgaaa
2101 gtcaagtttg gtggagtttt aggtagcttg ttatatcttg gttgtgaagc
2151 caagatatat tcaggagacc tttctccata tcc