Sequence of DPV Cassava brown streak virus
Cassava brown streak virus isolate CHAKE polyprotein gene, partial cds.
ACC No: GU563326
Dated: 2011-01-26 | Length: 2528 | CRC: -1682376426
ID GU563326; SV 1; linear; genomic RNA; STD; VRL; 2528 BP.
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AC GU563326;
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DT 13-DEC-2010 (Rel. 107, Created)
DT 26-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE Cassava brown streak virus isolate CHAKE polyprotein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-2528
RX PUBMED; 20923689.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Simultaneous virus-specific detection of the two cassava brown
RT streak-associated viruses by RT-PCR reveals wide distribution in East
RT Africa, mixed infections, and infections in Manihot glaziovii";
RL J. Virol. Methods 171(2):394-400(2011).
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RN [2]
RP 1-2528
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Department of Agricultrual Sciences, University of Helsinki,
RL Latokartanonkaari 7, Helsinki, Helsinki 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .2528
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="CHAKE"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /collected_by="Deusdedith R. Mbanzibwa"
FT /collection_date="2008"
FT /db_xref="taxon:137758"
FT CDS <1. .2397
FT /codon_start=1
FT /product="polyprotein"
FT /note="pol"
FT /protein_id="ADR73021.1"
FT /translation="QPSTVVDNTIILMIVVEYCREVMAHEGIEMKYKYMCNGDDLILNA
FT PDEEIPIIQSRFKNLFAECGLNYDFDDVHKEIDTIEYMSHSFARRDGFFIPKLKKERIV
FT AILEWERGDEIMRTRSALNAAYIESFGYDDLMTEIERFAVFWASEKGCEYPLLDRKRVE
FT GLYLDEHTDINEEWLSGILPPSFENCYIDLQVVDRPQLSSMNKREEEVTSKIRMGIEAP
FT ITFVTGNAQKLKEVKQIFGPTIPIISRKVDLPEPQGTVEEIIKEKVRVASELIGGPVLV
FT EDTSLCFDALNGLPGPYIKWFMEGIGLEGLYKLVEPYQNKMASALCVFAFVNKVGDDPI
FT IFKGVLRGEIVMPRGPNTFGWDPIFQPLNWRRTFAEMMAEEKNMISHRFRALSLVRDFL
FT KDSSYFSFAKGVDRDFFIDVQAIDKDEIETEITKLKELWRNNKPTRTRSPFESRRLRAP
FT QVARVNELLKQLKDAGIQTSKRPCGEPDEGEVASPESSEDEEQRTDKGKAPMEPPAEQS
FT QPEKSVGEDEGKHKKTRFRIRAGGGDEKRDDIDKIPTNALEFRKSFKPPKVSQAAYVWI
FT PRSQRDNLTPDVIQNFLAYVPPSHAIDNQLASGVEVENWAIEVSKAYGVTIQEFYRTIL
FT PAWIVNCIVNGTSDERKNEKSWRAVELNAQGEDIDDSEYPMEPMYKFALPTMRKIMRNF
FT SSQAILMYQNSVTAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILA
FT ANVGRSKTKLFALAAPSDDNNVDKERHTTRDVSATRHSYAGAAIE"
FT mat_peptide <1. .582
FT /product="NIb"
FT mat_peptide 583. .1260
FT /product="HAM1-like protein"
FT mat_peptide 1261. .2394
FT /product="CP"
FT 3'UTR 2398. .2528
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SQ Sequence 2528 BP; 823 A; 402 C; 631 G; 672 T; 0 other;
gu563326 Length: 2528 26-JAN-2011 Type: N Check: 1278 ..
1 cagccctcaa ctgttgtaga caacaccata attttgatga ttgtggttga
51 gtattgtaga gaagtgatgg cacatgaagg tattgaaatg aaatataagt
101 acatgtgtaa tggagatgac ctcattctta atgcgcctga tgaagaaatt
151 ccaataattc agagtcgttt caagaatttg ttcgcagaat gtggtttgaa
201 ctatgacttt gatgatgtcc acaaggagat agacacaata gagtatatga
251 gccactcatt tgctcgaaga gatggatttt tcattccaaa gctgaagaag
301 gagagaatag ttgcaatact tgagtgggaa agaggagatg agatcatgag
351 gacgagaagc gctcttaatg cagcttacat tgagagtttt ggttatgatg
401 atttaatgac agagattgaa aggtttgctg tgttctgggc atctgaaaag
451 ggttgtgagt acccgttatt agatagaaag cgagttgaag ggctttactt
501 ggatgaacac actgatatta atgaggaatg gttgagtggc atcttaccac
551 catcttttga gaattgctac attgatttac aggtggtaga caggcctcag
601 ttatcgagca tgaacaagag agaagaggaa gtcacaagta aaatccggat
651 ggggatcgaa gcaccgatta cattcgtaac agggaatgca caaaaattga
701 aggaagtaaa acaaatcttt ggtcccacta ttccaatcat ttctcggaaa
751 gttgacttgc cagaaccaca aggaacagtt gaggaaatta ttaaggaaaa
801 agtgcgtgta gcgtctgagt tgattggagg gcccgttctc gtagaggata
851 caagtttgtg ttttgatgct ctcaatggtc tcccaggacc atacattaag
901 tggttcatgg aagggattgg actagaagga ttgtataagt tggtggaacc
951 atatcaaaat aaaatggcta gtgctctctg tgtgtttgct tttgtaaata
1001 aggttggcga tgatcctata atctttaagg gtgtactaag aggtgagatt
1051 gtaatgccac gtggaccaaa tacatttggg tgggacccaa ttttccagcc
1101 acttaactgg agaaggactt ttgctgagat gatggccgag gagaagaata
1151 tgatatctca tcgatttcga gctctgtcgc tggtaagaga ctttttgaag
1201 gactcaagct atttcagctt tgcaaagggc gttgatcgtg atttcttcat
1251 tgatgtccaa gcaattgaca aggatgagat tgaaactgaa ataacaaaat
1301 tgaaggaatt gtggaggaac aacaagccaa ctagaactcg aagtccattt
1351 gaatcaagga ggctccgtgc ccctcaagta gctcgtgtga acgaactgct
1401 caaacaactg aaagatgctg ggattcaaac aagtaaaagg ccatgtggag
1451 aacctgatga aggggaggtt gctagcccag agtcaagcga agatgaggag
1501 caacgaacag acaaaggaaa agcacctatg gaaccacctg ctgagcaaag
1551 tcaaccagag aagtctgtag gtgaggatga ggggaaacat aaaaagacaa
1601 ggttcagaat aagagctggt ggtggagatg aaaagagaga tgatatagat
1651 aagattccaa ccaatgctct agaatttcgg aagagtttca aaccaccaaa
1701 agtgtcacaa gcagcatatg tgtggatacc gcgttcgcag agagacaatt
1751 tgacacctga tgtcatacag aactttctgg catacgtgcc tccatcacat
1801 gctatagaca atcaattggc ttccggagtt gaagttgaga attgggccat
1851 cgaagtctca aaagcttatg gagtcaccat tcaagagttt tatagaacga
1901 tcctacctgc ttggattgtt aattgtattg tgaatgggac tagcgatgag
1951 aggaagaacg agaaatcgtg gagagctgtt gagctaaatg cacagggtga
2001 ggatattgat gattcggaat accctatgga accaatgtat aaatttgctc
2051 tcccaacaat gaggaagata atgagaaatt tttccagcca agcaatttta
2101 atgtatcaga atagtgtgac tgctggaaaa gcttttgtaa taaaagcagc
2151 tcgaaatgcc gggtatacaa gcattgaaaa taagtggttg ggtattgact
2201 tcctagccga agcacaattg tcacaaagcc aactagatat caaacatcaa
2251 atattggctg ctaatgttgg tagaagtaaa actaagttgt ttgctttagc
2301 tgctcctagt gacgataata atgtggataa agaaaggcac actacgcggg
2351 atgttagtgc aactaggcat agctatgcag gtgctgctat tgaataaatt
2401 aatttgaaag tcaagtttgg tggagtttta ggtaacttgt tatattctgg
2451 ttgtgaagcc aagatatatt caggagccct ttctccatat ccttttattt
2501 agtgtggaaa cacaatatat aaaagtac