Sequence of DPV Sugarcane yellow leaf virus
Sugarcane yellow leaf virus isolate Haw73-6110b/fragmentC RNA-dependent RNA polymerase and putative aphid transmission factor genes, partial cds; and capsid protein and putative movement protein p17 genes, complete cds.
ACC No: GU570004
Dated: 2011-03-24 | Length: 1880 | CRC: 366147555
ID GU570004; SV 1; linear; genomic RNA; STD; VRL; 1880 BP.
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AC GU570004;
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DT 25-MAR-2010 (Rel. 104, Created)
DT 24-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Sugarcane yellow leaf virus isolate Haw73-6110b/fragmentC RNA-dependent RNA
DE polymerase and putative aphid transmission factor genes, partial cds; and
DE capsid protein and putative movement protein p17 genes, complete cds.
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KW .
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OS Sugarcane yellow leaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Polerovirus.
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RN [1]
RP 1-1880
RA ElSayed A.I., Weig A.R., Komor E.;
RT "Molecular characterization of Hawaiian Sugarcane yellow leaf virus
RT genotypes and their phylogenetic relationship to strains from other
RT sugarcane-growing countries";
RL Eur. J. Plant Pathol. 129:399-412(2011).
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RN [2]
RP 1-1880
RA Elsayed A.I., Weig A.R., Komor E.;
RT ;
RL Submitted (25-JAN-2010) to the EMBL/GenBank/DDBJ databases.
RL Plant Physiology, Bayreuth University, Universitaetsstr. 30, Bayreuth
RL 95440, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .1880
FT /organism="Sugarcane yellow leaf virus"
FT /lab_host="Saccharum hybrid cultivar H73-6110"
FT /isolate="Haw73-6110b/fragmentC"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /isolation_source="leaf"
FT /db_xref="taxon:94290"
FT CDS <1. .891
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /db_xref="GOA:D4P4U6"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:D4P4U6"
FT /protein_id="ADD84795.1"
FT /translation="GLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQA
FT QNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSG
FT FDWSVADWMLEDDMEVRNFLTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGV
FT QKSGPYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQL
FT EFCSHVFEREDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQL
FT VATLHEWLVPGAATK"
FT CDS 1086. .>1880
FT /codon_start=1
FT /transl_except=(pos:1674. .1676,aa:OTHER)
FT /product="putative aphid transmission factor"
FT /note="stop codon readthrough; ORF5"
FT /db_xref="GOA:D4P4U7"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:D4P4U7"
FT /protein_id="ADD84798.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVGDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPIPTPPAPTPAPASKY
FT LGYQGVPSNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQL"
FT CDS 1086. .1676
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF3"
FT /db_xref="GOA:D4P4U8"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:D4P4U8"
FT /protein_id="ADD84796.1"
FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG
FT GNAVRGPGGRSNRDVLTFTVGDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL
FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT
FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK"
FT CDS 1117. .1569
FT /codon_start=1
FT /product="putative movement protein p17"
FT /note="ORF4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:D4P4U9"
FT /protein_id="ADD84797.1"
FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE
FT ATGMFSLSRLAISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT
FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS"
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SQ Sequence 1880 BP; 496 A; 500 C; 466 G; 418 T; 0 other;
gu570004 Length: 1880 24-MAR-2011 Type: N Check: 7463 ..
1 ggattgtgcg atccgattcg tttgttcgtc aaaggagaac cgcacaagca
51 ggcgaagctt gatgaagggc gctaccgcct catcatgtca gtctcgctgg
101 tagatcaact ggtagcccgg gttttgttcc aagcacaaaa caaaagagag
151 atagctttgt ggagagctat cccttcaaag cccggttttg gcttatccac
201 agacagggaa gcacgcgaat tcatcgaatc cctgtccaag acagtagggt
251 gttccccagc agaagtcatt catggctgga gggacaagat cgtacccacc
301 gactgttccg gttttgactg gtcagtcgcc gactggatgc tcgaagacga
351 catggaagtg agaaattttc tcactatcaa taacaacgag ctaacccgcc
401 gcctcagagc gtgctggttg aagtgcatca caaactctgt gatttgcacg
451 tccggcggtg tcttgtacgc ccaaactcat cctggggtgc aaaaatctgg
501 accttacaac acgagttcat ccaattccag gattcgagta atggctgctt
551 ttcattgcgg cgcagattgg gcgatagcca tgggagacga tgcacttgag
601 tctccaaact ccaacatcaa cgcgtatcaa aagttggggt ttaaagtcga
651 ggttgcctca cagctagaat tttgctcaca cgtctttgag cgggaggacc
701 tcgccaggcc gttgaatgta aacaaaatgc tttatcgttt gatctttgga
751 tacaatccgg cctgtggcaa cgcggaggta ttgtgcaatt acctccaagc
801 tgtggcttct gttctcaacg agcttcgcca tgatccacag ctagttgcta
851 ccctccatga gtggctggtc cctggcgccg ccacaaaata aatacggagg
901 ggcatcccga gccaccacat aggttgcaag agtggaacgg gaagtcctat
951 agacaagccg cgcgattctg gattacaaac ttctagcggg gattctcatt
1001 ggtgttctca tcgcaatccc cctagtgatc atagcggctt acctgatatt
1051 cctcaaaatc agtgcacaca tccgagcgat agtgaatgaa tacgggcgct
1101 aaccgctcac gaaggaatgt cagaagacgc gctaaccgtc gtagacagac
1151 tcggccagtg gtcgtggtcc gggctccccc aggacctaga cgagtacgac
1201 gacgtagagc acgtgttgga ggaaacgctg tgcgaggacc gggaggaaga
1251 agcaaccggg atgttctcac tttcacggtt ggcgatctca aagccaactc
1301 aaccgggatc ctcaaattcg gaccgaacct atctcagtac gcagcgttca
1351 acaatggctt actcaaagcc taccatgagt ataaaatcac aagtctcact
1401 attcagtata actcatgctc ctccgacgca actccaggtg caatcgcact
1451 tgaagtggat acatcctgct cccaaacaac aacaggctcc aagattacta
1501 gcttccccgt caagaggaac gccaagaaag tcttcccggc ccccttcatc
1551 agggggaaag atttcatgac tacgtcagct gaccagtttt ggttgctgta
1601 caaagggaat ggagactcga gcctagcagg acaattcgtt tgccgatttg
1651 aatgtctttt ccagaatccc aaataggtag gcgacgctcc cccaacaccc
1701 accccaatac caaccccacc cgctccgacc ccggcaccgg cttctaagta
1751 tcttggatac caaggagtgc cgagcaacat cgtgaaaacg agaggaaact
1801 ctgaatatct ggatgtgggt ccgctcgaaa atgtaaccat gtatctctgg
1851 caagacgaat cgtggagcat tgagcaactg