Sequence of DPV Tomato yellow leaf curl Thailand virus
Tomato yellow leaf curl Thailand virus isolate HS3-1 segment DNA-A, complete sequence.
ACC No: GU723734
Dated: 2010-04-01 | Length: 2744 | CRC: 298413048
ID GU723734; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
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AC GU723734;
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DT 01-APR-2010 (Rel. 104, Created)
DT 01-APR-2010 (Rel. 104, Last updated, Version 1)
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DE Tomato yellow leaf curl Thailand virus isolate HS3-1 segment DNA-A,
DE complete sequence.
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KW .
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OS Tomato yellow leaf curl Thailand virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2744
RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.;
RT "Molecular diversity and pathogenicity of tomato-infecting begomoviruses in
RT Taiwan";
RL Unpublished.
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RN [2]
RP 1-2744
RA Tsai W.S., Shih S.L., Green S.K., Kenyon L., Jan F.-J.;
RT ;
RL Submitted (08-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Virology Unit, AVRDC-The World Vegetable Center, PO Box 42, Shanhua,
RL Tainan, Taiwan 74199, ROC
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FH Key Location/Qualifiers
FH
FT source 1. .2744
FT /organism="Tomato yellow leaf curl Thailand virus"
FT /segment="DNA-A"
FT /host="tomato"
FT /isolate="HS3-1"
FT /mol_type="genomic DNA"
FT /country="Taiwan:Jhubei, Hsinchu"
FT /collection_date="2007"
FT /db_xref="taxon:85752"
FT CDS 87. .482
FT /codon_start=1
FT /product="V2 protein"
FT /protein_id="ADE09195.1"
FT /translation="MVPYLRLSHQVSTKFKMWDPLLNEFPENVHGFRCMLAVKYLQAVE
FT KTYSPDTLGFDLIRDLIGVIRAKNYVEASSRYSHFHARLESTSPSELRQPIQQPCCCPH
FT CPRHKGADMEEPTCIQKAQVLQNVQKS"
FT CDS 295. .1065
FT /codon_start=1
FT /product="V1 protein"
FT /note="coat protein"
FT /protein_id="ADE09192.1"
FT /translation="MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWK
FT NRPAYRKPRFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR
FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEP
FT STATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH
FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN"
FT CDS complement(1062. .1466)
FT /codon_start=1
FT /product="C3 protein"
FT /protein_id="ADE09194.1"
FT /translation="MDLRTGELLTATQLESGVYIWTVKNPLYFKITKHLESPFQRNHDI
FT ITLQIQFNHNLRKALGIHKCFLVCKIWTHLHPQTSRFLTVFKYQCIKYLDRLGVISINN
FT VIRAMSHVLYNVLEGTIDVIEEHDIKFNIY"
FT CDS complement(1207. .1611)
FT /codon_start=1
FT /product="C2 protein"
FT /protein_id="ADE09193.1"
FT /translation="MRSSSPSKAHSTQVPIKVQHRIAKRATRRRRVDLPCGCSYFVAIG
FT CHNNGFTHRGTTHCNSIREWRVYLDGQKSPIFQDNQAPREPIPEEPRHNHVTNPVQPQP
FT EESVGDTQMFSSLQNLDSFTSSDLAFLNSI"
FT CDS complement(1514. .2599)
FT /codon_start=1
FT /product="C1 protein"
FT /note="replication-associated protein"
FT /protein_id="ADE09191.1"
FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALETPTNKLFIR
FT ICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYM
FT EKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALTILREKAPKDFVLQFH
FT NLNSNLDRIFTPPMEEYISPFSSSSFNQVPEELKEWACNNVLSAAARPLRPIGIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNNVWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIRNAIFVTLKSPL
FT YSGSNQGATPNSQEGNQTTES"
FT CDS complement(2149. .2448)
FT /codon_start=1
FT /product="C4 protein"
FT /protein_id="ADE09196.1"
FT /translation="MKMGLLTCMSSSNSKENSNVKIKDSSISHPQPGQHISIRTFRELK
FT AQQMLKHTWKKTETCLIMEFSRSMEDRLGEVANLPTTHMPRQSIQGPKLRPSLY"
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SQ Sequence 2744 BP; 732 A; 544 C; 605 G; 863 T; 0 other;
gu723734 Length: 2744 01-APR-2010 Type: N Check: 4681 ..
1 accggatggc cgcgattttt tttgaagtgg tccccttgat gtgatgtttc
51 atccaattaa aacgctcggc caaagcttaa ttatttatgg tcccctattt
101 aagacttagt caccaagttt cgacgaaatt caaaatgtgg gatccactcc
151 taaacgaatt tccggaaaac gtccacggtt tccgttgtat gttagcggtt
201 aagtatctgc aagcggtcga gaagacgtat tcacctgata ccctagggtt
251 tgatctcatc cgtgatctca tcggtgtaat tcgtgcgaag aactatgtcg
301 aagcgtccag cagatattct catttccacg cccgtctcga aagtacgtcg
351 ccgtctgaac ttcgacagcc catacaacag ccgtgctgct gtccccactg
401 tccgcgtcac aaaggggcag atatggaaga accgacctgc atacagaaag
451 cccaggttct acagaatgta cagaagtcct gatgtcccta agggatgtga
501 gggtccatgt aaagtgcaat ctttcgatgc gaagaacgac attggtcata
551 tgggcaaggt aatctgtctg tctgacgtta cccgtggtat tgggcttact
601 catcgagttg gcaagcgttt ctgtgtcaag tcactttatt ttgtcgggaa
651 gatctggatg gatgaaaata ttaaggttaa gaatcacact aataccgttt
701 tattttggat agttagggat cggcgtccta ctggaacgcc taatgatttt
751 cagcaggtct ttaacgtata tgataatgaa cccagcactg ctactgtaaa
801 gaacgaccag cgtgatcgtt tccaggttat aaggaggttt caggcaacgg
851 tgactggtgg acaatatgca gctaaggagc aggcgattat tagaaagttt
901 tatcgtgtta ataattatgt agtttacaat caccaggaag ctgggaagta
951 cgagaaccat actgaaaatg ctttgttgtt gtatatggca tgtactcatg
1001 cctctaatcc tgtgtatgct actttgaaag tcagaagtta tttctatgac
1051 tcagtgacga attaataaat attaaatttt atatcgtgtt cttcaattac
1101 atcaattgtt ccttctaata cattgtacag tacatgagac attgccctaa
1151 ttacattatt tatactaatc acgcctaatc tatctaaata tttaatacat
1201 tgatatttaa atactgttaa gaaacgcgag gtctgaggat gtaaatgagt
1251 ccagattttg cagactagaa aacatttgtg tatccccaac gctttcctca
1301 ggttgtggtt gaactggatt tgtaacgtga ttatgtcgtg gttcctctgg
1351 aatgggctct ctaggtgctt ggttatcttg aaatataggg gatttttgac
1401 cgtccagata tacacgccac tctctaattg agttgcagtg agtagttccc
1451 cggtgcgtaa atccattatt gtgacatcct attgcgacga agtacgaaca
1501 tccacaaggt agatcaactc tccgtcgtct ggttgccctc ttggctattc
1551 ggtgttgcac cttgattgga acctgagtag agtgggcttt tgagggtgac
1601 gaagatcgca tttcttatag cccagtttct aagtgcggag ttcttttctt
1651 cttccaagta ctctttataa ctggagttgg gtccaggatt gcagagaaag
1701 atagtgggaa ttccgccttt aatttgaact ggctttccgt actttgtgtt
1751 tgattgccag tccctttggg cccccatgaa ttctttaaag tgttttagat
1801 agtgcggatc gacgtcatcg atgacgttgt accacacatt attattgtac
1851 acttttggac ttaaatctaa atggccacac agataattat gtggtcccaa
1901 tgacctagcc cacatcgtct tccccgttct gctatcaccc tcaattacta
1951 taccaatggg tctcaatggc cgcgcagcgg cactgagaac attattacaa
2001 gcccattctt taagttcttc tggaacttga ttaaaagaag aagaagaaaa
2051 tggagaaata tattcctcca ttggaggagt aaaaatccta tctaaattag
2101 aatttaaatt atgaaattgc aaaacaaaat ctttaggggc tttttccctc
2151 agtatagtga gggccgaagc tttggaccct gaattgattg cctcggcata
2201 tgcgtcgttg gcagattggc aacctcccct agccgatctt ccatcgatct
2251 ggaaaattcc atgatcaagc acgtctccgt ctttttccat gtatgtttta
2301 acatctgttg agcttttagc tccctgaatg ttcggatgga aatgtgctga
2351 cctggttggg gatgtgagat cgaagaatct ttgattttta cattggaatt
2401 ttccttcgaa ttggatgagg acatgcaggt gaggagtccc atcttcatgg
2451 agttccctgc agattctgat aaataattta ttagttggtg tttctagtgc
2501 ttgaatttgg gaaagtgctt cctctttagt gagagaacaa tgtgggtatg
2551 tcaggaaata gttcttggca tttattctga atttattagg aggagccatt
2601 gactggtcaa tcggtgtctc tcaaacttgg ctatgcaatc ggtgtctggg
2651 gtcttattta tacctggaca ccaaatggca taattgtaat ttagtgaatg
2701 tgatttacaa ttcaaaatcc aaaagcggcc atccgtataa tatt