Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate CAZINA5 segment RNA2 polyprotein gene, complete cds.
ACC No: GU972575
Dated: 2010-06-28 | Length: 3485 | CRC: -2024200990
ID GU972575; SV 1; linear; genomic RNA; STD; VRL; 3485 BP.
XX
AC GU972575;
XX
DT 28-JUN-2010 (Rel. 105, Created)
DT 28-JUN-2010 (Rel. 105, Last updated, Version 1)
XX
DE Grapevine fanleaf virus isolate CAZINA5 segment RNA2 polyprotein gene,
DE complete cds.
XX
KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-3485
RX PUBMED; 20540977.
RA Oliver J.E., Vigne E., Fuchs M.;
RT "Genetic Structure and Molecular Variability of Grapevine fanleaf virus
RT Populations";
RL Virus Res. 0:0-0(2010).
XX
RN [2]
RP 1-3485
RA Oliver J.E., Fuchs M.;
RT ;
RL Submitted (04-MAR-2010) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Plant-Microbe Biology, Cornell University, 630 West
RL North Street, Geneva, NY 14456, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3485
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera cultivar Zinfandel"
FT /isolate="CAZINA5"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="leaf"
FT /collection_date="16-Oct-2007"
FT /db_xref="taxon:12274"
FT CDS 1. .3333
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B),
FT and coat protein (2C)"
FT /protein_id="ADJ10932.1"
FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINTDSSFRQTVKE
FT DVQENREQPTAVRMFSWKIGFGPIDNPEKCDWHFVLTGERPAQPSRPVKADEVVVVPQP
FT KKVVTPSPPPPPVPYFRAVGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQ
FT GAPLKLSLAAKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQNPPSFQERVRE
FT FCRMKSCAKAFALETSLGLNKAWVGLVDIPSTSVCCADGKTTGGQTIAQEADPLQHRIS
FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL
FT PPLRSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS
FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERDMTRASIGSASTFLGNGLARAIFFPG
FT LQYSQEEPRREFIIRLYVASTNATVDTDSVLAAISVGTLRQHVGSMHYRTVASAVHQAQ
FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS
FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPKDCQANRYLGTLNIRDTI
FT SDFKGVQYERWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITISADPVY
FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ
FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALRSAGLTLGQ
FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIILWVVSEWNGTTMDWNEL
FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL
FT PIVVQIDEIVRPDLSLPSFEGGYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGE
FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLVGDKATGLVGPSQVFAIQ
FT KLEGVTELLVGNFAGANPNTHFSLYSRWMAIKLDQAKSTKVLRVLCKPRSGFSFYGRTS
FT FPV"
FT 3'UTR 3334. .>3485
XX
SQ Sequence 3485 BP; 831 A; 744 C; 926 G; 984 T; 0 other;
gu972575 Length: 3485 28-JUN-2010 Type: N Check: 1024 ..
1 atgggcaaat tttattattc caacaggcga cttgcctgtt gggctgctgg
51 gaagaaccct catcttgggg gttctgttga gcaatggctg gcggccatta
101 atactgattc ctccttccgc caaactgtta aggaggatgt tcaggaaaac
151 agagaacagc caactgctgt tcgaatgttt tcttggaaaa ttgggttcgg
201 gcccattgac aatcccgaga aatgcgattg gcatttcgtc cttacgggcg
251 aaaggccagc gcaaccgtcc cggccggtca aagccgatga ggttgtggtg
301 gtgccacaac cgaagaaggt ggtgacccct tcaccgcctc ctcccccagt
351 tccctatttt agggctgttg gggcttttgc accaacccgg tccgggttta
401 ttcgggccac tgtggaaagg ctcacccggg aacgggagga gtcgagagct
451 gcggcactct ttgccgaatt gccattggag taccctcagg gtgctcctct
501 gaagttgagc ctggcggcga aattcgccat gctcaaacat accacttgga
551 ggaagtggta tgacactagt gatgagcgcc ttttggaggc tcatcctggt
601 ggtccttgtc ttcctccccc tcccccaatc caaaatcctc cctccttcca
651 ggagagggtg agggagtttt gcaggatgaa gtcctgcgcc aaggcttttg
701 ccttggaaac ctccctaggt ctcaataagg cctgggtggg tttagtggac
751 atccccagta cttctgtgtg ctgtgcggat gggaagacta ccggtgggca
801 gacaattgcc caggaagctg atcctttgca acataggatc agtacgtcag
851 tagcccccgg tagggcacaa tggatctccg agcgcaggca agctctgcgg
901 aggagagagc aagcaaatag cttgcaaggt cttgctgctc aaaccgatat
951 gacttttgag caggccagga atgcttatct tggtgctgcc gacatgattg
1001 agcaaggcct accgctgctt ccccctctgc gcagcgctta cgcccctagg
1051 ggtttgtgga ggggaccctc gaccagagcc aattacacgc tagattttag
1101 gctcaatggt attccgaccg ggacaaacac attggaaata ttgtataatc
1151 ctgtgtcgga ggaagagatg gaagagtacc gggacagggg catgtcagct
1201 gtggtaattg atgcgctaga aatagccata aacccatttg gcatgcctgg
1251 aaatcctacg gacttgactg tcgtagcgac atatgggcat gagcgcgaca
1301 tgacgcgcgc ctctattgga tctgcttcca cattcttagg gaatgggtta
1351 gctagagcca ttttctttcc tggtttgcaa tatagccagg aggaaccaag
1401 gcgcgaattt ataattcgcc tatatgttgc ctctaccaat gccactgtgg
1451 atactgattc agtcttggca gccattagtg ttggcacttt gcgtcaacat
1501 gttggttcca tgcactaccg gacagtggct agtgccgtgc accaggctca
1551 ggtgcaagga acgacgctca gggctactat gatgggtaac actgtcgtag
1601 tatcacctga aggaagcctg gttactggaa cccctgaagc aagagttgaa
1651 atagggggcg gttctagtat taggatggtg ggacctctac agtgggaaag
1701 tgtggaggaa ccagggcaaa ccttctctat cagaagccgt tcacggtctg
1751 tgaggattga tagaaacgtt gatcttcctc aacttgaggc tgagcccaga
1801 ttgagctcaa ccgtgagagg attagctggt agaggagtaa tttatattcc
1851 caaggattgc caggcaaaca ggtacttggg caccctgaat atacgtgaca
1901 cgatctcaga ttttaagggt gttcagtatg aaaggtggat aactgcaggg
1951 ttggtcatgc ctacttttaa gatagttgtt aggctacctg caaatgcctt
2001 tactggattg acatgggtga tgagctttga tgcttataat cggataacta
2051 gtagaattac tattagtgcg gatcctgttt ataccctttc agtccctcat
2101 tggcttatcc accataagtt gggcacgttt tcatgtgaaa ttgactatgg
2151 agaattgtgt ggtcatgcta tgtggttcaa gtccacaaca tttgaatctc
2201 ctaggttgca ttttacatgt ttgacgggca acaacaaaga gttggcagca
2251 gattggcaag ctgttgtgga actatatgct gaattggaag aagccacatc
2301 ttttcttggg aaaccaacat tggtttttga cccaggtgtt tttgatggta
2351 aattccagtt tttaacttgc cctcccattt tctttgattt aacagccgtc
2401 acggctctta ggagtgctgg actgacattg ggacaggtcc caatggttgg
2451 tactactaag gtgtataacc taaatagcac tcttgtgagt tgtgttttgg
2501 gcatgggagg tactattaga ggaagggtgc atatttgtgc tccaatcttc
2551 tatagtataa ttttgtgggt tgttagtgag tggaacggga ccactatgga
2601 ctggaacgaa ctttttaagt atcccggggt gtatgtggaa gaggatggaa
2651 gctttgaagt taaaatccgt tctccatatc accgaacgcc tgctaggttg
2701 cttgctggac aaagccagag ggacatgagt tctctgaact tttatgcaat
2751 agcgggacct attgctccat cgggtgagac tgcacgactt cctattgttg
2801 tacaaattga tgaaatcgtg cgcccagacc tctctctacc gagttttgaa
2851 ggtggttatt ttgtgtgggt ggatttttct gagttcactc ttgataaaga
2901 agaaattgag attggttctc gtttctttga tttcacttca agtacttgta
2951 gggtgtctat gggagaaaac ccatttgctg caatgattgc ttgccacgga
3001 ttgcacagtg gtgtattaga cctcaagctt caatggagtc taaacactga
3051 gtttggtaag agcagcggga gcgtcactat cacgaagctg gttggtgaca
3101 aagccacggg tctggttggg ccttcacaag tttttgccat acaaaaacta
3151 gagggagtta cggagttgtt ggttgggaat tttgcaggag caaacccaaa
3201 tactcatttc tccctctata gtcgatggat ggcaattaaa ttggatcaag
3251 caaagagtac taaagtactc cgtgtcttgt gtaaaccccg ttcaggtttc
3301 agtttttatg gaagaaccag ctttccagtc tagggtatct gactttaaaa
3351 gacccaagtg tgcctacgcg tttttaggtt gtgtgtgttg ttttgtatta
3401 tagtttgctt taacttgttt actgctttag tgtgttttgt ttcatgcctt
3451 gttggacaca aaaagatttt cctttctttt tactg