Sequence of DPV Tomato leaf curl Ghana virus
Tomato leaf curl Cameroon virus - Fontem complete sequence, isolate TFB17
ACC No: HE659516
Dated: 2013-01-07 | Length: 2797 | CRC: -598091185
ID HE659516; SV 1; circular; genomic DNA; STD; VRL; 2797 BP.
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AC HE659516;
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DT 07-JAN-2013 (Rel. 115, Created)
DT 07-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Tomato leaf curl Cameroon virus - Fontem complete sequence, isolate TFB17
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KW complete genome.
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OS Tomato leaf curl Cameroon virus - Fontem
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2797
RA Leke W.N.;
RT ;
RL Submitted (29-JAN-2012) to the INSDC.
RL Leke W.N., Institute of Agricultural Research for Development (IRAD),
RL Annual Crops, Box 2123 Messa, Yaounde, CAMEROON.
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RN [2]
RA Nkeabeng L.W., Noe W.;
RT "First report of mixed infection of two newly identified West African
RT tomato infecting begomoviruses infecting tomato in Cameroon";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2797
FT /organism="Tomato leaf curl Cameroon virus - Fontem"
FT /host="Solanum lycopersicum"
FT /isolate="TFB17"
FT /mol_type="genomic DNA"
FT /country="Cameroon:South West-Fontem"
FT /collected_by="Leke Walter"
FT /identified_by="Leke Walter"
FT /db_xref="taxon:1141724"
FT CDS 167. .517
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CCF77723.1"
FT /translation="MWDPLLNEFPDSVHGFRCMLGIKYLQLLEEEYEPNTLGHDLIRDL
FT ISVIRAKNYVEATRRYHNFHTRLEGASTSELRQPLYQPCCCPHCPRHKQASFVDLPAHV
FT SKAKNVQDVQKP"
FT CDS complement(318. .638)
FT /gene="C5"
FT /product="hypothetical protein"
FT /protein_id="CCF77724.1"
FT /translation="MSQTGPTGNITNTTDYTQVLHIISLLKRLDLTWAFTSTRDVRASV
FT HPVHSWLSIHGPVSPRTTLAYAADSGDNSTAGIGAVEVQTSTHLRDGCGNYDIAGSLRH
FT NS"
FT CDS 327. .920
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="CCF77725.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAVVPTVRGISKRRSW
FT TYRPMYRKPRMYRMYRSPDIPRGCEGPCKIQSFEQRDDVKHLGVVRCVSDVTRGSGLTH
FT RVGKRFCIKSICILGKVWMDENIKKQNHTNNVMFFLVRDLDRPYGSPSDFGQIFNMFDN
FT EPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKE"
FT CDS complement(1100. .1504)
FT /gene="C3"
FT /product="replication enhancement protein"
FT /protein_id="CCF77726.1"
FT /translation="MDSRTGELITAHQAWNGVFIWEIQNPLYFKITNHDERPFNYQHDI
FT ITVQIRFNHNLRKALGIHKCFLNFKIWTSLRPQTGRFLRVFRFQVLKYLDNLGVISINA
FT IIRAVDHVLYNVLESTIYVLEKHEIKFNIY"
FT CDS complement(1245. .1652)
FT /gene="C2"
FT /product="transcriptional activation protein"
FT /protein_id="CCF77727.1"
FT /translation="MRPSSPSTSHCTQVPIKVQHRIAKKKVVRRKRVDLECGCTYFIHI
FT NCSNHGFTHRGTHHCASSLEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNNSTNQVQPQ
FT PAEGIGDSQVFSELQDLDELTPSDWSFLKGI"
FT CDS complement(1561. .2640)
FT /gene="C1"
FT /product="replication associated protein"
FT /protein_id="CCF77728.1"
FT /translation="MAPPRKFRINSKNYFLTYPKCSLEKEEALSQLQNLDTPTNKKYIK
FT ICRELHENGEPHLHVLLQFEGKYNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGCQNANDAAAEALNAGSAEAAMAIIKEKLPKEFIFQYH
FT NLKSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMSAAARPLRPISIVIEGD
FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYIEYLDEEKNAALKAWAIKNATFFTLNEPL
FT YSSADQSPAPHREEESSEA"
FT CDS complement(2226. .2483)
FT /gene="C4"
FT /product="hypothetical protein"
FT /protein_id="CCF77729.1"
FT /translation="MASLISMCFCNSKANTTARINDSSTWYPQQGQHISIQTFRELNPA
FT PTSSPTSTRTGTHLNGENSKSTAEVLEEAARMLTTQPQKH"
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SQ Sequence 2797 BP; 747 A; 564 C; 609 G; 877 T; 0 other;
he659516 Length: 2797 07-JAN-2013 Type: N Check: 3158 ..
1 accggatggc cgcgattttt tttgccgtac acgctccaaa gtaaaagtaa
51 agtgaactcc ggtcccaccc actaataaat gtcagccaat cagaatgaag
101 cctgaaagct tccttatctc gattttgtct ttatatactt gcctctccaa
151 gtagttttat tgcatcatgt gggacccatt attaaatgaa ttcccagatt
201 cagtccatgg tttccgttgt atgctgggta taaaatatct gcagctttta
251 gaagaggagt acgagcccaa tactttgggc cacgatttaa ttagagatct
301 catttctgtc attagggcta agaattatgt cgaagcgacc cggcgatatc
351 ataatttcca cacccgtctc gaaggtgcgt cgacgtctga acttcgacag
401 cccctatacc agccgtgctg ttgtccccac tgtccgcggc ataagcaagc
451 gtcgttcgtg gacttaccgg cccatgtatc gaaagccaag aatgtacagg
501 atgtacagaa gccctgacat ccctcgtgga tgtgaaggcc catgtaagat
551 ccagtcgttt gagcagagag atgatgtgaa gcacttgggt gtagtccgtt
601 gtgttagtga tgttacccgt gggtccggtc tgactcatag agtagggaag
651 agattttgca ttaagtctat ttgcatttta ggtaaagtat ggatggacga
701 aaatatcaag aagcagaatc atactaacaa tgttatgttt ttcttagtcc
751 gtgatctaga taggccttat ggcagtccta gtgattttgg acagattttt
801 aacatgttcg acaacgaacc cagtacagct acaatcaaga atgatctcag
851 agaccgttat caagttctgc gtaaattcag tgcaactgtt attggtggtc
901 cctccggatg caaggaatag gctttggtga agagattttt taaacttaac
951 aatcatgtcg tttataatca tcaggaggag gctaaatatg ccaaccatac
1001 tgagaatgct ttgttgttgt atatggcttg tactcatgcc tctaaccctg
1051 tgtatgctac tctgaaaata cgcatctatt tctacgatgc agttacgaat
1101 taataaatat taaattttat ttcatgtttt tctaatacat agattgtact
1151 ttcaagtacg ttgtacaata catgatcaac tgctctaata attgcattaa
1201 ttgaaattac acccaaatta tctagatact ttaacacctg aaacctaaat
1251 acccttaaga aacgaccagt ctgagggcgt aagctcgtcc agatcttgaa
1301 gttcagaaaa cacttgtgaa tccccaatgc cttccgcagg ttgtggttga
1351 acctgatttg tactgttatt atgtcgtgtt ggtaattgaa cggtctctcg
1401 tcgtggttgg ttatcttgaa atacagggga ttttgtatct cccagataaa
1451 aacgccattc caagcttgat gcgcagtgat gagttcccct gtgcgtgaat
1501 ccatgattac tgcagttaat atgtatgaag tatgtgcacc cgcactctaa
1551 gtccaccctt ttacgcctca ctactttctt cttcgcgatg cggtgctgga
1601 ctttgatcgg cacttgagta caatggctcg ttgagggtga agaaggtcgc
1651 attcttaata gcccaggctt ttaatgccgc attcttttcc tcgtccagat
1701 attctatata tgatgatgtc ggtcctggat tgcagaggaa gatagtggga
1751 attccacctt taatttgaat gggcttcccg tacttggtgt tgctttgcca
1801 gtctcgctgg gcccccataa attccttaaa gtgttttaga taatggggat
1851 cgacgtcatc aatgacgtta taccaagcgt tattagaata aacctttgga
1901 cttaagtcta aatgaccaca taagtaatta tgtggcccta atgacctagc
1951 ccaaactgtt ttgccggtac gactatcgcc ctcaataact atactaatcg
2001 gtcttaaagg ccgcgcagcg gcactcatga cgttttccga aacccactct
2051 tcaagttctt ccggaacttg attaaaagaa gaagataaaa aaggagaaac
2101 ataaggagct ggaggctcct gaaaaatcct atctaaattt gattttaaat
2151 tatgatattg aaaaataaat tctttaggga gcttctcctt aataatagcc
2201 atagcggctt cagcggaacc tgcgtttaat gcttctgcgg ctgcgtcgtt
2251 agcattctgg cagcctcctc tagcacttct gccgtcgatt tggaattctc
2301 cccattcaag tgtgtccccg tccttgtcga tgtaggactt gacgtcggag
2351 ctggatttag ctccctgaat gtttggatgg aaatgtgctg accttgttgg
2401 ggataccagg tcgaagaatc gttgattctg gcagttgtat ttgccttcga
2451 attgcagaag cacatggaga tgaggctcgc cattttcgtg gagttctctg
2501 cagattttga tgtatttttt gttagttgga gtatcgaggt tttgtaattg
2551 ggaaagtgcc tcttcttttt cgagagagca tttgggataa gtgaggaaat
2601 aattttttga gttaattctg aattttctag gaggagccat atggtcaact
2651 agcaccgatt gactcttctg tgatttatcc ctagtgaatt ggggttctat
2701 atatacttag cactgaatgg tataatggca taaatgtaat tagataaaag
2751 taatttgctt tattttgaat cggtatagcg gccatccgta taatatt